Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_B12
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.10 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.31 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.72 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.95 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.2  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    27   2.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 16/48 (33%), Positives = 17/48 (35%)
 Frame = -3

Query: 679 PPXXPPXGXGXFXXPXGXXXXPXPPPLGGXXXXPPGXGGGXXXXPPPP 536
           PP  PP        P      P  P +GG    PP  G      PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 30.3 bits (65), Expect = 0.41
 Identities = 15/48 (31%), Positives = 15/48 (31%)
 Frame = +1

Query: 670 PXGXXFXXPPPRXXPXKXPPXXXGXKTXPPPPXGXAPXPXXSPXGAPP 813
           P       P P   P   P    G    PPPP G A      P   PP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 0.95
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 800 GGPPPXXPXXXXXFLPPXPPPXEXPXLS 883
           GGPPP  P        P PPP   P +S
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVS 786



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 525 PPPPGGGGXXXXPPPXP 575
           PPPPG  G    PPP P
Sbjct: 765 PPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +3

Query: 783 PXXXXXGGPPPXXPLXXXXFSPPXPPXGXPP 875
           P     GGPPP  P      + P PP   PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +1

Query: 754 PPPPXGXAPXPXXSPXGAPPXXXXXXXXXSPP 849
           PPPP    P P  +P   PP          PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = +1

Query: 670 PXGXXFXXPPPRXXPXKXPPXXXGXKTXPP-PPXGXAPXPXXSPXGAPP 813
           P G     P P   P   PP   G    PP PP   AP P  +P  A P
Sbjct: 440 PMGAPAAPPLPPSAPIA-PPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +2

Query: 806 PPPXXPXXXXXFLPPXPPPXEXPXLSXPRXRXXPLXP 916
           PP   P       PP PPP      S P     P+ P
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP 277



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
 Frame = -3

Query: 616 PXPPPLGGXXXXPP-GXGGGXXXXPPPP 536
           P PPP       PP G G      PPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPP 340



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +1

Query: 712 PXKXPPXXXGXKTXPPPPXGXAPXPXXSPXGAP 810
           P   PP      + P PP G +  P   P  AP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = -1

Query: 930 PPPGXGXRGXLLXRGXERXGXSXGGGXGGRXXXXXXGXXG-GGPPG 796
           PPPG G  G     G E       GG GG       G  G GG PG
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +1

Query: 694  PPPRXXPXKXPPXXXGXKTXPPPPXGXAPXPXXSPXGAPP 813
            PP R  P    P      T PPPP    P P   P  A P
Sbjct: 1690 PPVR--PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
 Frame = +1

Query: 694  PPPRXXPX--KXPPXXXGXKTXPPPPXGXAPXP 786
            PPP   P     PP   G  + PPPP   +  P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = +1

Query: 697  PPRXXPXKXPPXXXGXKTXPP-PPXGXAPXPXXSPXGAPP 813
            PP   P   PP        PP P    A  P  +P GAPP
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 800  GGPPPXXPXXXXXFLPPXPPPXEXPXLSXPRXRXXPLXP 916
            G PP   P      +PP PPP E P +  P     P+ P
Sbjct: 1177 GIPPVPKPAAG---VPPVPPPSEAPPVPKPSVGVPPVPP 1212



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +1

Query: 694  PPPRXXPXKXPPXXXGXKTXPPPPXGXAPXPXXSPXGAPP 813
            PP        PP        P P    A  P  +P GAPP
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
 Frame = +1

Query: 697  PPRXXPXKXPPXXXGXKTXPP-PPXGXAPXPXXSPXGAPP 813
            PP   P + PP        PP PP   AP       G PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 842 LPPXPPPXEXPXLSXPRXRXXPLXPXPG 925
           +PP P P   P L     R  P+ P PG
Sbjct: 33  VPPRPKPGRKPALDALGRRKAPIKPRPG 60


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = +2

Query: 797 PGGPPPXXPXXXXXFLPPX-PPPXEXPXLSXPRXRXXP 907
           PG PPP  P     F PP  PPP   P     R    P
Sbjct: 6   PGNPPPPPPPPG--FEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 525 PPPPGGGGXXXXPPPXPGG 581
           PPPPG       PPP P G
Sbjct: 13  PPPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,452
Number of Sequences: 5004
Number of extensions: 25199
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)