Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_B09
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0777 - 11116217-11116812,11117176-11117299                       32   0.71 
03_02_0104 + 5645285-5645677,5645990-5646034,5646225-5646454,564...    31   1.2  
10_08_1031 - 22427691-22428086                                         29   3.8  
06_01_0896 - 6889754-6890236                                           29   3.8  
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101...    29   3.8  
04_04_0327 - 24419686-24419697,24419786-24420082                       28   8.8  

>03_02_0777 - 11116217-11116812,11117176-11117299
          Length = 239

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 34  TXRPPFXTLGTRAAQRDHCARVPG--VATRPAPTCWLGSRGPGCERRETASS 183
           T  P   T   R  + +   R PG   AT P P C+ G R P   RRE A+S
Sbjct: 24  TFAPASTTSPPRGEEAERGGRSPGREAATLPGPDCYQGGRSP---RREAATS 72


>03_02_0104 +
           5645285-5645677,5645990-5646034,5646225-5646454,
           5646549-5646624,5646705-5646781,5646960-5646990,
           5647058-5647210,5647287-5647421,5647526-5647606
          Length = 406

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -1

Query: 234 EASHVSKRGQSRGSSDVAGRRLAPFASGPTRPQPTCWGWAR--CNAGDPGTMVP 79
           EAS     GQ+    DVAG    P A+GP+R +P   G  R    AG P  +VP
Sbjct: 57  EASREPDAGQASREPDVAGPSRQPGAAGPSR-EPGAAGGPRQPGAAGGPWQLVP 109


>10_08_1031 - 22427691-22428086
          Length = 131

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 170 SRRSHPGPRDPSQHVGAGRV 111
           SRR+H GP+ P++H G  RV
Sbjct: 25  SRRAHLGPKPPARHYGVRRV 44


>06_01_0896 - 6889754-6890236
          Length = 160

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 90  CQGPRRCNAPSPNMLAGVAWARMRTARDGVQRRRSSLWTGR 212
           C GPR     +P+ +AG A AR   +R  ++R     W GR
Sbjct: 116 CVGPRAPPPSAPSFIAGAADAR-HPSRLSIRRGEEERWKGR 155


>02_04_0622 -
           24508508-24508666,24509533-24509634,24510108-24510176,
           24510294-24510362,24510428-24510502,24510584-24510688,
           24511309-24511407,24511521-24513230,24513489-24513788,
           24514748-24514846,24514962-24515079,24515166-24515251,
           24515334-24515402,24515746-24515843,24516373-24516534,
           24516779-24516787,24516970-24516991,24517620-24517712,
           24517872-24517940,24518720-24518782,24518882-24519037,
           24520895-24521230
          Length = 1355

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
 Frame = -3

Query: 376 NNYNNIIKSYC*LS*HLFTLIRHLPHNPEFKIKSPIM-DMRVCLVASRRGESRQ*ARPVQ 200
           N+ + I+++ C  S +   ++ +    PE +  S I  D+  C VA    E R  AR   
Sbjct: 379 NDRSAILRARC--SEYAILILEYWADAPEIQRASDIYEDLIKCCVADAMSEVRATARSCY 436

Query: 199 RLERRRWTPSRAVRIRAHATPANMLGL----GALQRRGP 95
           R+  + W P R+ R+     PA    +    G LQ+R P
Sbjct: 437 RMFTKTW-PERSRRLFMSFDPAVQRIINDEDGGLQKRYP 474


>04_04_0327 - 24419686-24419697,24419786-24420082
          Length = 102

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 24/69 (34%), Positives = 29/69 (42%)
 Frame = +1

Query: 40  RPPFXTLGTRAAQRDHCARVPGVATRPAPTCWLGSRGPGCERRETASSDVARASGLAALT 219
           RPPF   G R       A    VA   A   W+G     C RRE A+  V  A  LAA+ 
Sbjct: 2   RPPFRIRGVRRMSAALAAVNVAVAAAGAAAEWVGVT-ERCGRREEAA--VGAAVALAAVR 58

Query: 220 DVTRLDDSR 246
            V  +  +R
Sbjct: 59  IVAMVGTAR 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,163,694
Number of Sequences: 37544
Number of extensions: 399333
Number of successful extensions: 1143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)