Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_B09
         (900 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC065232-1|AAH65232.1|  142|Homo sapiens chromosome 22 open read...    31   5.7  
AB050774-1|BAB83036.1|  142|Homo sapiens N27C7-4 protein.              31   5.7  
AF258550-1|AAG23753.1|  116|Homo sapiens PP13 protein.                 30   10.0 

>BC065232-1|AAH65232.1|  142|Homo sapiens chromosome 22 open reading
           frame 16 protein.
          Length = 142

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -1

Query: 213 RGQSRGSSDVAGRRLAPFASGPTRPQPTCWGWARCNAGDPGTMVPLRXPSA 61
           RG    +S  A R  AP A  P  P P+    A   +G PG M  +   +A
Sbjct: 3   RGSRSAASRPASRPAAPSAHPPAHPPPSAAAPAPAPSGQPGLMAQMATTAA 53


>AB050774-1|BAB83036.1|  142|Homo sapiens N27C7-4 protein.
          Length = 142

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -1

Query: 213 RGQSRGSSDVAGRRLAPFASGPTRPQPTCWGWARCNAGDPGTMVPLRXPSA 61
           RG    +S  A R  AP A  P  P P+    A   +G PG M  +   +A
Sbjct: 3   RGSRSAASRPASRPAAPSAHPPAHPPPSAAAPAPAPSGQPGLMAQMATTAA 53


>AF258550-1|AAG23753.1|  116|Homo sapiens PP13 protein.
          Length = 116

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 109 ATRPAPTCWLGSRGPGCERRETASSDVAR 195
           A RP P  +L + GPGC  RE A   + R
Sbjct: 16  APRPRPPPFLAAAGPGCAGREAAFPGITR 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,611,217
Number of Sequences: 237096
Number of extensions: 2211565
Number of successful extensions: 8722
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8721
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)