Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_B08
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 36 0.057
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.40
07_01_0479 + 3606663-3607448 32 0.70
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 32 0.70
02_05_0686 - 30900748-30902167,30903442-30904742 31 0.93
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 31 1.2
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 1.6
12_02_1174 - 26696869-26698191 30 2.8
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 29 5.0
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 5.0
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 29 5.0
07_03_1136 + 24218601-24218734,24218769-24219906 29 6.6
12_02_0981 - 25027336-25027596,25028017-25028361,25028681-250288... 28 8.7
09_04_0368 + 17005231-17005437,17005707-17005963,17006061-170061... 28 8.7
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 28 8.7
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544... 28 8.7
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 28 8.7
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 35.5 bits (78), Expect = 0.057
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +2
Query: 467 PPPPXXXXXXXPPGGPGGXKXXXXXXXXGGXXPPXXPPP 583
PPPP PP P G GG PP PPP
Sbjct: 273 PPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPPP 311
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.7 bits (71), Expect = 0.40
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +3
Query: 447 GXXGXXPPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXG 575
G PPPP P PG G GGP PP G
Sbjct: 1180 GGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPG 1222
Score = 31.9 bits (69), Expect = 0.70
Identities = 37/156 (23%), Positives = 40/156 (25%), Gaps = 4/156 (2%)
Frame = +2
Query: 263 PAPQWMXPLLGVXGRKCXPXS---GAAXXXXXXXXXNGFXXPPXNXXKGGGKKXXXXXXF 433
P P + P LG G P S GA G PP GG +
Sbjct: 1083 PLPPPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPL- 1141
Query: 434 XKXXXXFXGXXPPPPXXXXXXXP-PGGPGGXKXXXXXXXXGGXXPPXXPPPPXXXXXXXX 610
G PPPP P P P G + G P PPPP
Sbjct: 1142 ---PEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAP--PPPPPRGHGGVG 1196
Query: 611 XXXXXXXXXXPXXXXGXXXXXXPPPXXXXXXXPXXG 718
P G PPP P G
Sbjct: 1197 GPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGG 1232
Score = 30.7 bits (66), Expect = 1.6
Identities = 24/78 (30%), Positives = 24/78 (30%)
Frame = +1
Query: 448 GFXGXXPPPPPXXXXXXPPXGXRGXKXXXXXXXXGGXPPPXXAPPPXXXXXXXXXXXXXX 627
GF G PPP PP RG GG P P AP P
Sbjct: 1168 GFRGGTPPPNAHGGVAPPPPPPRG------HGGVGGPPTPPGAPAP---------PMPPG 1212
Query: 628 XXGXPXXPPGXXXXXXPP 681
G P PPG PP
Sbjct: 1213 VPGGPPPPPGGRGLPAPP 1230
>07_01_0479 + 3606663-3607448
Length = 261
Score = 31.9 bits (69), Expect = 0.70
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 452 FXGXXPPPPXXXXXXXPPGGPGGXKXXXXXXXXGGXXPPXXPPP 583
F G PPPP PP GP + G P PPP
Sbjct: 197 FPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPP 240
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 31.9 bits (69), Expect = 0.70
Identities = 14/40 (35%), Positives = 15/40 (37%)
Frame = +2
Query: 467 PPPPXXXXXXXPPGGPGGXKXXXXXXXXGGXXPPXXPPPP 586
P P PPGG GG + PP PPPP
Sbjct: 32 PNPNNSYHRRGPPGGGGGDRRGGFQLPPDAAPPPPPPPPP 71
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.5 bits (68), Expect = 0.93
Identities = 18/39 (46%), Positives = 18/39 (46%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPP 581
PPPPP P PGGKK GGP PP PP
Sbjct: 354 PPPPPPKGPSPPPPPPPGGKK--------GGPPPP--PP 382
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPP--XGPPP 584
PPPPP P P K G P PP GPPP
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPP 355
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/77 (27%), Positives = 21/77 (27%), Gaps = 5/77 (6%)
Frame = +1
Query: 466 PPPPPXXXXXXPPXGXRGXKXXXXXXXXGGXPPPXXA-----PPPXXXXXXXXXXXXXXX 630
PPPPP P K G PPP A PPP
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373
Query: 631 XGXPXXPPGXXXXXXPP 681
G P PP PP
Sbjct: 374 KGGPPPPPPKGGASRPP 390
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Frame = +2
Query: 458 GXXPPPPXXXXXXXPPGGPGGXK--XXXXXXXXGGXXPPXXPPPP 586
G PPPP PP PGG K G PP P P
Sbjct: 352 GPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396
>02_02_0307 -
8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -1
Query: 556 PPXXPXXXXXFXPPGXPXGXXXXXXXGGGGGXXPKXP 446
PP P PG P G GGGGG P P
Sbjct: 146 PPPPPASPDAAKTPGSPAGGGGGVGAGGGGGEEPMYP 182
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPP 581
PPPPP G P G G GG P PP
Sbjct: 146 PPPPPASPDAAKTPGSPAGGGGGVGAGGGGGEEPMYPPP 184
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +3
Query: 456 GXXPPPPPXXXXXXXPXG-XPGGKKXXXXXGXXGGPXPPXGPP 581
G PPPPP P G PG G GG PP P
Sbjct: 348 GPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALP 390
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPP 584
PPPPP P P K P PP PPP
Sbjct: 125 PPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPP 164
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +2
Query: 467 PPPPXXXXXXXPPGGPGGXKXXXXXXXXGGXXPPXXPPPP 586
PPPP PP P K PP PPPP
Sbjct: 126 PPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPP 165
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Frame = +2
Query: 467 PPPPXXXXXXXPPGGP--GGXKXXXXXXXXGGXXPPXXPPP 583
PPPP PPGGP GG PP PP
Sbjct: 310 PPPPWGHPSNVPPGGPGYGGNPQFMPPRPQDHYYPPPDVPP 350
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.1 bits (62), Expect = 5.0
Identities = 23/90 (25%), Positives = 24/90 (26%)
Frame = +1
Query: 457 GXXPPPPPXXXXXXPPXGXRGXKXXXXXXXXGGXPPPXXAPPPXXXXXXXXXXXXXXXXG 636
G PP PP PP + G PPP APPP G
Sbjct: 16 GGFPPQPPPMNPYGPPPPQQ--PAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFG 73
Query: 637 XPXXPPGXXXXXXPPPXXXXXXXXPXXXXP 726
PG PPP P P
Sbjct: 74 -----PGPPQQQQPPPPPQMYYQPPPPPPP 98
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/96 (25%), Positives = 24/96 (25%)
Frame = -3
Query: 752 GXXXXXGXXGXXXXGXXXXXXXXGGGXXXXXXPGGXXGXPXXXXXXXXXXXXXXXXGGGA 573
G G G G GGG PGG G GG
Sbjct: 27 GRGGGYGGAGGGGVGGRGGRGPPGGGGGRGYEPGGGRGYGGGGGGGGRGYGGGGGGGGYE 86
Query: 572 XXGGGXPPXXXXXXXFFXPRXPXGGXXXXXXGGGGG 465
GG R P GG GGGGG
Sbjct: 87 SGGGRGYGGGGRGYESGGGRGPGGGGRGHESGGGGG 122
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = -1
Query: 580 GGPXGGXGPPXXPXXXXXFXPPG-XPXGXXXXXXXGGGGG 464
GG GG GP P PG P G GGGGG
Sbjct: 174 GGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGGGG 213
>12_02_0981 -
25027336-25027596,25028017-25028361,25028681-25028827,
25028906-25029970
Length = 605
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -3
Query: 296 PPVKAXSTEGRVFXLHHHRIRDGXXXVXXTGGGG 195
PP+ A + + + HH + +G + GGGG
Sbjct: 95 PPIPAANVANAITNVLHHHVGEGVQLLPVQGGGG 128
>09_04_0368 +
17005231-17005437,17005707-17005963,17006061-17006115,
17006196-17006276,17006357-17006453,17006560-17006627,
17006788-17006886,17007008-17007049,17007124-17007263,
17007882-17008018,17008275-17008444
Length = 450
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 555 PPXXXXXXXXFXPPGPPGGXXXXXXXGGGGXXP 457
PP + PP PPG GGGG P
Sbjct: 6 PPWLLLPSFPWPPPPPPGSSSGRGGGGGGGGDP 38
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/40 (30%), Positives = 12/40 (30%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPP 584
PPPPP P GP P PPP
Sbjct: 308 PPPPPPPPPPPMPRSRSASPSPSTSSSGSAGPPAPPPPPP 347
>04_04_0137 -
23053148-23053798,23053911-23054146,23054268-23054458,
23054587-23056010
Length = 833
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPP 584
PPPPP P + G P PP PPP
Sbjct: 365 PPPPPPPPPPPPPPAVTQQQDVKTSCGPAVPPPPPPTPPP 404
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -1
Query: 583 GGGPXGGXGPPXXPXXXXXFXPPG 512
GGG GG PP P + PPG
Sbjct: 29 GGGGGGGGAPPYRPASGFVWPPPG 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,089,561
Number of Sequences: 37544
Number of extensions: 556287
Number of successful extensions: 1598
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -