Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_B08
(892 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 35 0.090
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 35 0.090
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.48
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.48
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.48
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 2.6
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 30 2.6
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 30 2.6
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 30 2.6
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 30 2.6
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 3.4
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 3.4
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 3.4
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 3.4
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 29 3.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.4
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 29 4.5
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 4.5
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.5
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 4.5
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 4.5
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 5.9
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 5.9
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 28 7.8
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 28 7.8
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 7.8
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 7.8
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 7.8
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 28 7.8
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 7.8
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 34.7 bits (76), Expect = 0.090
Identities = 21/73 (28%), Positives = 21/73 (28%)
Frame = +1
Query: 466 PPPPPXXXXXXPPXGXRGXKXXXXXXXXGGXPPPXXAPPPXXXXXXXXXXXXXXXXGXPX 645
PPPPP P G GG PPP PPP P
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP---PPPRYPSAGPGMYPPPPPSRPPA 373
Query: 646 XPPGXXXXXXPPP 684
P G PPP
Sbjct: 374 PPSGHGMIPPPPP 386
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Frame = +2
Query: 467 PPPPXXXXXXXPPGGPG-GXKXXXXXXXXGGXXPPXXPPPP 586
PPPP PP P G G PP PPPP
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 304
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPP 584
PPPPP P P G+ G G P P PPP
Sbjct: 287 PPPPPSSGMWPPPPPPPPGR----TPGPPGMPGMPPPPPP 322
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 34.7 bits (76), Expect = 0.090
Identities = 21/73 (28%), Positives = 21/73 (28%)
Frame = +1
Query: 466 PPPPPXXXXXXPPXGXRGXKXXXXXXXXGGXPPPXXAPPPXXXXXXXXXXXXXXXXGXPX 645
PPPPP P G GG PPP PPP P
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP---PPPRYPSAGPGMYPPPPPSRPPA 383
Query: 646 XPPGXXXXXXPPP 684
P G PPP
Sbjct: 384 PPSGHGMIPPPPP 396
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Frame = +2
Query: 467 PPPPXXXXXXXPPGGPG-GXKXXXXXXXXGGXXPPXXPPPP 586
PPPP PP P G G PP PPPP
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 314
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPP 584
PPPPP P P G+ G G P P PPP
Sbjct: 297 PPPPPSSGMWPPPPPPPPGR----TPGPPGMPGMPPPPPP 332
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.3 bits (70), Expect = 0.48
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +3
Query: 456 GXXPPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPP 581
G PPPPP G P GGP PP PP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPP 584
PPPPP P PGG K GGP PP PPP
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFK--------GGPPPP--PPP 790
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +2
Query: 458 GXXPPPPXXXXXXXPPGGPGGXKXXXXXXXXGGXXPPXXPPP 583
G PPPP GGP G PP PPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.48
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +3
Query: 456 GXXPPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPP 581
G PPPPP G P GGP PP PP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPP 584
PPPPP P PGG K GGP PP PPP
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFK--------GGPPPP--PPP 790
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +2
Query: 458 GXXPPPPXXXXXXXPPGGPGGXKXXXXXXXXGGXXPPXXPPP 583
G PPPP GGP G PP PPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.3 bits (70), Expect = 0.48
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +3
Query: 456 GXXPPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPP 581
G PPPPP G P GGP PP PP
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 348
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPP 584
PPPPP P PGG K GGP PP PPP
Sbjct: 344 PPPPPGGCPPPPPPPPPGGFK--------GGPPPP--PPP 373
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +2
Query: 458 GXXPPPPXXXXXXXPPGGPGGXKXXXXXXXXGGXXPPXXPPP 583
G PPPP GGP G PP PPP
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 348
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 31.5 bits (68), Expect = 0.84
Identities = 21/88 (23%), Positives = 21/88 (23%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPPXXXXXXXXXXXXXXXXGXXP 644
PP P P G PG G GG PP P P G
Sbjct: 108 PPGPDGSAGPAGPAGNPGADGDAGSPGEAGGAGPPGPPGPDGNPGAPGNDGEAGSPGTRS 167
Query: 645 XXXXGXXXXXXPPXXXXXXXXPXXGXPP 728
G PP P G P
Sbjct: 168 ISSPGPAGPAGPPGPPGPDGAPGGGSGP 195
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 31.5 bits (68), Expect = 0.84
Identities = 21/88 (23%), Positives = 21/88 (23%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPPXXXXXXXXXXXXXXXXGXXP 644
PP P P G PG G GG PP P P G
Sbjct: 108 PPGPDGSAGPAGPAGNPGADGDAGSPGEAGGAGPPGPPGPDGNPGAPGNDGEAGSPGTRS 167
Query: 645 XXXXGXXXXXXPPXXXXXXXXPXXGXPP 728
G PP P G P
Sbjct: 168 ISSPGPAGPAGPPGPPGPDGAPGGGSGP 195
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 31.5 bits (68), Expect = 0.84
Identities = 20/70 (28%), Positives = 20/70 (28%)
Frame = +1
Query: 376 PPXEXXXRGGKKKXXPXPFXXXXXGFXGXXPPPPPXXXXXXPPXGXRGXKXXXXXXXXGG 555
PP P P G PPPPP G K GG
Sbjct: 521 PPPPMPGMAPLSTGAPTPPPPPPVGMANGGPPPPPPLPLDLLKGAVAGLKSVP-----GG 575
Query: 556 XPPPXXAPPP 585
PPP PPP
Sbjct: 576 PPPPPPPPPP 585
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +2
Query: 467 PPPPXXXXXXXPPGGPGGXKXXXXXXXXGGXXPPXXPPPP 586
P P PPG PGG G PP P PP
Sbjct: 171 PGPAGPAGNAGPPGAPGGPGAPGNTPSGGAAGPPGPPGPP 210
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXG--GPXPPXGPP 581
PP PP P G PG K G G G P GPP
Sbjct: 231 PPGPPGAPGNDGPPGPPGPKGAPGPDGPPGVDGQSGPPGPP 271
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Frame = +2
Query: 470 PPPXXXXXXXPPGGPGGXKXXXXXXXXGGXXPP----XXPPPP 586
PPP PP GPGG G PP PPPP
Sbjct: 66 PPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPP 108
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXG--GPXPPXGPP 581
PP PP P G PG K G G G P GPP
Sbjct: 226 PPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPP 266
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXG--GPXPPXGPP 581
PP PP P G PG K G G G P GPP
Sbjct: 233 PPGPPGAPGNDGPPGPPGPKGSPGPDGPAGVDGQAGPPGPP 273
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXG--GPXPPXGPP 581
PP PP P G PG K G G G P GPP
Sbjct: 226 PPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPP 266
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXG--GPXPPXGPP 581
PP PP P G PG K G G G P GPP
Sbjct: 233 PPGPPGAPGNDGPPGPPGPKGSPGPDGPAGVDGQAGPPGPP 273
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +2
Query: 467 PPPPXXXXXXXPPGGPGGXKXXXXXXXXGGXXPPXXPPPP 586
PPPP PGG GG G PP PP
Sbjct: 790 PPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPPNMAPP 829
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +2
Query: 467 PPPPXXXXXXXPPGGPGGXKXXXXXXXXGGXXPPXXPPPP 586
PPPP PGG GG G PP PP
Sbjct: 790 PPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPPNMAPP 829
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 580 GGPXGGXGPPXXPXXXXXFXPPGXP 506
GGP GG GPP P P G P
Sbjct: 619 GGPGGGGGPPRGPGGGGGGGPTGPP 643
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 503 PGGPGGXKXXXXXXXXGGXXPPXXPPPP 586
PGGPGG GG P PP P
Sbjct: 618 PGGPGGGGGPPRGPGGGGGGGPTGPPAP 645
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 580 GGPXGGXGPPXXPXXXXXFXPPGXP 506
GGP GG GPP P P G P
Sbjct: 619 GGPGGGGGPPRGPGGGGGGGPTGPP 643
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 503 PGGPGGXKXXXXXXXXGGXXPPXXPPPP 586
PGGPGG GG P PP P
Sbjct: 618 PGGPGGGGGPPRGPGGGGGGGPTGPPAP 645
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPP--XGPP 581
PP PP P G PG G P PP GPP
Sbjct: 190 PPGPPGKQGPKGPNGEPGAPGTPGGNALPGPPGPPGPQGPP 230
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPP 584
PPPPP P G G G P PP G PP
Sbjct: 272 PPPPPTGSPPPPPAG---GSPPPPRAGSPPPPPPPRGSPP 308
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPP 584
PPPPP P G G G P PP G PP
Sbjct: 293 PPPPPTGSPPPPPAG---GSPPPPRAGSPPPPPPPRGSPP 329
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPP 584
PPPPP P G G G P PP G PP
Sbjct: 278 PPPPPTGSPPPPPAG---GSPPPPRAGSPPPPPPPRGSPP 314
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPP 581
PP PP G G K G G P PP GPP
Sbjct: 209 PPGPPGPKGPRGTPGPTGPKNFYITSGPPGPPGPP-GPP 246
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -1
Query: 577 GPXGGXGPPXXPXXXXXFXPPGXPXGXXXXXXXGGGGGXXPKXP 446
GP G GPP P PPG P G G G P P
Sbjct: 238 GPPGPPGPPGNPGGIGPRGPPGDP-GIMTQDSRGVEGPSGPSGP 280
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 4.5
Identities = 24/92 (26%), Positives = 24/92 (26%), Gaps = 5/92 (5%)
Frame = +3
Query: 468 PPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGP---PPXXXXXXXXXXXXXXXXG- 635
PP P P G P G GGP P GP PP G
Sbjct: 151 PPGPFDPSGAPPSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGG 210
Query: 636 -XXPXXXXGXXXXXXPPXXXXXXXXPXXGXPP 728
P G PP P G PP
Sbjct: 211 PTGPFDPSGAPPSGGPPGPFNPSGAPPSGGPP 242
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 471 PPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPP 581
PPP P G G G GP P GPP
Sbjct: 60 PPPAPRPSGQPPGPQGPSDLPGPSGAPPGPPHPSGPP 96
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPP 584
PPPP P GG G P P GPPP
Sbjct: 1573 PPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGGPPP 1612
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +1
Query: 448 GFXGXXPPPPPXXXXXXPPXGXRGXKXXXXXXXXGGXPPPXXAPPP 585
G+ G PPP PP G G PPP PPP
Sbjct: 1568 GWRGGPPPPRGGSHCQGPPP-LMGGPPPRLGMPPPGPPPPNGGPPP 1612
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/64 (28%), Positives = 20/64 (31%)
Frame = +1
Query: 376 PPXEXXXRGGKKKXXPXPFXXXXXGFXGXXPPPPPXXXXXXPPXGXRGXKXXXXXXXXGG 555
PP +G P PF PPP PP RG + GG
Sbjct: 742 PPPPMFQQGFNAGAPPPPFGRGAGPMSSFPPPPRGGMHHMPPPPSFRGGR-----GGHGG 796
Query: 556 XPPP 567
PPP
Sbjct: 797 PPPP 800
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPP 581
PP PP P G PG G G P PP GPP
Sbjct: 182 PPGPPGPDGNAGPAGAPG---VPGPDGDAGSPPPP-GPP 216
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPP 581
PP PP P G PG + G G P P GPP
Sbjct: 157 PPGPPGPAGPPGPKGLPGPQGDAGTSGQDGVPGLP-GPP 194
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +3
Query: 447 GXXGXXPPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPP 584
G G PPPP G P G GGP GPPP
Sbjct: 404 GGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPG-AYGPPP 448
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = -1
Query: 580 GGPXG-GXGPPXXPXXXXXFXPPGXPXGXXXXXXXGGGGGXXP 455
GGP G G PP P + PP G GG G P
Sbjct: 404 GGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGP 446
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = -1
Query: 577 GPXGGXGPPXXPXXXXXFXPPGXPXGXXXXXXXGGGGGXXPKXP 446
GP G GPP PPG P G G P P
Sbjct: 141 GPPGPAGPPGPQGNKGPLGPPGPPGPEGPNGTAGNKGPAGPPGP 184
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +3
Query: 471 PPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPPP 584
PPP P G PG G G P P G P
Sbjct: 147 PPPCKPCPDGPAGPPGPPGAPGDAGTNGAPGAPGGDAP 184
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGP 578
PP P G PGG G G P PP P
Sbjct: 163 PPGAPGDAGTNGAPGAPGGDAPPGEAGPKGPPGPPGSP 200
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGP 578
PP PP G PG G G P PP P
Sbjct: 158 PPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGPPGAP 195
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -1
Query: 580 GGPXGGXGPPXXPXXXXXFXPPGXPXGXXXXXXXGGGGGXXPK 452
GGP G G P PP G GG GG PK
Sbjct: 181 GGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGGPGGMLPK 223
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -1
Query: 580 GGPXGGXGPPXXPXXXXXFXPPGXPXGXXXXXXXGGGGGXXPK 452
GGP G G P PP G GG GG PK
Sbjct: 461 GGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGGPGGMLPK 503
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = -1
Query: 577 GPXGGXGPPXXPXXXXXFXPPGXPXGXXXXXXXGGGGGXXPKXP 446
GP G GPP PPG P G G P P
Sbjct: 143 GPPGPAGPPGPDGNKGPLGPPGPPGPEGPNGEPGNKGPAGPPGP 186
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGPP 581
P PP P G PG K G G P P GPP
Sbjct: 159 PLGPPGPPGPEGPNGEPGNKGPAGPPGPGGKPG-PAGPP 196
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +3
Query: 465 PPPPPXXXXXXXPXGXPGGKKXXXXXGXXGGPXPPXGP 578
PP PP G PG G G P PP P
Sbjct: 158 PPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGPPGAP 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,993,256
Number of Sequences: 27780
Number of extensions: 311957
Number of successful extensions: 2480
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1904
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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