Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_B06
(926 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.53
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.70
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.70
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 5.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 8.7
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.53
Identities = 31/138 (22%), Positives = 32/138 (23%)
Frame = +2
Query: 503 PPPXXPQKXXXXXXXGFFXGXXXPPPPXXXPXXPXXXXPGGKXXPXPPXXPXFXKXPXPP 682
P P PQ PP P P P P P P K P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
Query: 683 PXXXGXXPPXXKKXXFXXPXXXPPPXXXPPXFPXKKXFFXXXXPXXRGPXXXXXPPKXPP 862
P PP P PPP P P P PK
Sbjct: 188 PSLPSAVPP-------MPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKF-- 238
Query: 863 PXGGXXXPXXXXXGXPPN 916
P G P PP+
Sbjct: 239 PNRGPSIPSASVPPVPPS 256
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.70
Identities = 25/99 (25%), Positives = 26/99 (26%), Gaps = 2/99 (2%)
Frame = +2
Query: 572 PPPPXXXPXXPXXXXPGGKXXPXPPXXPXFXKXPXPPPXXXGXXPPXXKKXXFXXPXXXP 751
PPPP P G+ P PP P P PP P P
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPP-------PPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Query: 752 P--PXXXPPXFPXKKXFFXXXXPXXRGPXXXXXPPKXPP 862
P P P P P P PP PP
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPV--PTPPSLPPSAPP 429
Score = 26.6 bits (56), Expect = 5.0
Identities = 26/121 (21%), Positives = 27/121 (22%), Gaps = 2/121 (1%)
Frame = +2
Query: 329 PPXXXTPXXXKPXPXKXXXPXKXXXGGXXPXXPRXXVXXXPPXXXXXXXX-PPXXXGGXP 505
PP P + P P P PP PP
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSL 423
Query: 506 PPXXPQKXXXXXXXGFFXGXXXPPP-PXXXPXXPXXXXPGGKXXPXPPXXPXFXKXPXPP 682
PP P G PP P P P P PP P P P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483
Query: 683 P 685
P
Sbjct: 484 P 484
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.70
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +1
Query: 415 PXXPPXXGXXXPPXXXXXXXXPPXXXXGXPPPPXXXXXXXXXXXXFFXGXXXPPPPPXXP 594
P PP P PP G PPPP G PPPPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG--------VAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +2
Query: 575 PPPXXXPXXPXXXXPGGKXXPXPPXXPXFXKXPXPPP 685
P P P P GG P PP P PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/33 (33%), Positives = 11/33 (33%)
Frame = +3
Query: 414 PPXXPXXXFXXPPXXPXXXFXPPXXXXGXPPPP 512
PP P P PP G PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 5.0
Identities = 38/190 (20%), Positives = 41/190 (21%)
Frame = +3
Query: 213 PXPXYRPPXXXXXXXXXXXTPXVXSXKKKXRGGPXXKKIXPXXKPXSXRNPXXKKXXXPK 392
P P PP P V + + P P P P
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP 1103
Query: 393 XPXXGXXPPXXPXXXFXXPPXXPXXXFXPPXXXXGXPPPPXXXXXXXXXXXXVFXRXXXA 572
P P P P P P G PP P A
Sbjct: 1104 VPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP-----VPAPSGA 1158
Query: 573 PPPPXXPXXXPXXFXXGXKXPPXPPXXXIXXKXXXPPQXXGGXXPPXKKXXXFXXXXXXP 752
PP P P PP P PP PP K P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVP-----KPAAGVPPVPPPSEAPPVPK-PSVGVPPVPP 1212
Query: 753 PPXXPPXFSP 782
P PP +P
Sbjct: 1213 PSTAPPVPTP 1222
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +3
Query: 750 PPPXXPPXFSPXKXFFXXXXXPXXXXPXXXXXPXNXPPPXGXPXXPP 890
PPP PP P P N PPP P PP
Sbjct: 238 PPPPPPPTLPPQSTNTSQLPMPSRNV-NNLGSQVNIPPPPATPSQPP 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.154 0.558
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,313
Number of Sequences: 5004
Number of extensions: 23800
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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