Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_A19
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch...    49   7e-07
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|...    46   5e-06
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    36   0.010
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    31   0.21 
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    29   1.1  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   3.4  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    27   4.5  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    26   5.9  

>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 129

 Score = 49.2 bits (112), Expect = 7e-07
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = +1

Query: 58  FIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASEMF 168
           +I++ + VYD++ FL+ HPGG EVLVD AG DAS  F
Sbjct: 21  YIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPF 57


>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 16/37 (43%), Positives = 29/37 (78%)
 Frame = +1

Query: 58  FIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASEMF 168
           +++I+  VYDV+ F +DHPGG ++++D AG DA++ +
Sbjct: 21  YMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAY 57


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = +1

Query: 58  FIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASEMF 168
           +I I   VY+V+A+L  HP G + ++D AG DA+ +F
Sbjct: 89  WIAIRGKVYNVSAYLPYHPAGQKRILDYAGRDATVIF 125


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 61  IIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASEMFPRG 177
           ++I+ VV+D+  F  +HPGG  +L    G DA+  F  G
Sbjct: 376 VLINGVVHDMTGF--EHPGGQGLLRSAFGKDATAAFNGG 412


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 145

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +1

Query: 58  FIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASEMF 168
           ++ I   VY+V A+L  HP G + ++ ++G DA++ +
Sbjct: 87  WMAIRGKVYNVTAYLPYHPVGPKKILKHSGVDATKPY 123


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 246 FSSSTISPTLNVLRHSMAISLWPTSWKHL 160
           FS  T+   L++LR  + +S WP++WK L
Sbjct: 170 FSQKTVDYRLSLLRW-IHLSSWPSNWKWL 197


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 155 ASEPALSTRTSVPPGWS--SRKAATSYTTLS 69
           A+EP+ ST T +PP +S  S   A+ Y+T S
Sbjct: 310 AAEPSSSTATDIPPPYSTPSVAGASDYSTPS 340


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 167 NISEASEPALSTRTSVPPGWSSRKAATSY 81
           NI+    PAL+ RT     W+++K   SY
Sbjct: 25  NIARKQLPALNNRTLYQKKWNAKKETRSY 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,306
Number of Sequences: 5004
Number of extensions: 46900
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)