Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_A13
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce...    32   0.11 
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    27   4.3  

>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 452 GGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKIE 565
           G + C +C     +  ++L H  GKKHQ NL     +E
Sbjct: 52  GTFECRLCLTTHANENSYLTHTQGKKHQTNLARRQALE 89


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 464 CNVCDCVVKDSINFLDHINGKKHQRNL-GMSMKIERSSLDQVK 589
           C VC+   +      +H N KKH++NL  M+ +I++ + +  K
Sbjct: 272 CMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIKKHAKEAQK 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,776
Number of Sequences: 5004
Number of extensions: 49631
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)