Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_A06
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.95 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   5.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   8.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.8  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 282 DIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNI--LFVINSPDVYK 437
           D++   +Q+R +   R+ M KL     +    V+  + KN+  L +I  PD+ K
Sbjct: 421 DVILVGEQARAQDGLRRRMDKLKSSIEEANLAVSAEREKNVSLLHLIFPPDIAK 474


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +3

Query: 396 KNILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERF 527
           K I+   +S  +++ P++   I++   KIE  +    +   E+F
Sbjct: 423 KRIIDYYHSYKMHQKPYNKDEIIYPNLKIESFTVDKLITYFEQF 466


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +3

Query: 396 KNILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERF 527
           K I+   +S  +++ P++   I++   KIE  +    +   E+F
Sbjct: 423 KRIIDYYHSYKMHQKPYNKDEIIYPNLKIESFTVDKLITYFEQF 466


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 751 CRRSLRHNILCHCC*F 798
           CR       LCHCC F
Sbjct: 737 CRYEAHCFALCHCCDF 752


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 490 CPHRPPWLQQRDSRHQRPQPLAMTLPQLERRW 585
           C  R  W+ +R +     + LA+++  L R W
Sbjct: 55  CYFRQSWVDRRLAFQGGKETLALSISMLARIW 86


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 538 SGALNLSAAAMVACVDKSSILASP 467
           SG  +   AA+ A V  SSI++SP
Sbjct: 371 SGKKSKFNAAVAAAVQSSSIVSSP 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,253
Number of Sequences: 438
Number of extensions: 3858
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)