Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_A03
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   199   4e-52
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   199   4e-52
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.85 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   1.1  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   4.5  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    26   7.9  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   7.9  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  199 bits (486), Expect = 4e-52
 Identities = 89/155 (57%), Positives = 117/155 (75%)
 Frame = +3

Query: 105 VKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARV 284
           ++ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR R+
Sbjct: 4   LRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRI 63

Query: 285 RKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSL 464
           RK   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLYH+L
Sbjct: 64  RKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTL 123

Query: 465 YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 569
           Y++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 124 YLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  199 bits (486), Expect = 4e-52
 Identities = 89/155 (57%), Positives = 117/155 (75%)
 Frame = +3

Query: 105 VKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARV 284
           ++ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR R+
Sbjct: 4   LRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRI 63

Query: 285 RKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSL 464
           RK   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLYH+L
Sbjct: 64  RKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTL 123

Query: 465 YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 569
           Y++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 124 YLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 239 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 150
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 218 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 123
           +VLS +    ++D  +  PHLL  +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 274 ALVSAKTQRHVERVVTVALVREEVQPMRVCHRR 372
           ++V  K  +  E+++  AL RE V+P R  H++
Sbjct: 652 SVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 408 IFLEPFVFVPIVPSVAYAHWLYLFSYQSHSDDPFYVPL 295
           I L+ F+ +  V S  Y  WL++F  Q H ++ F  P+
Sbjct: 302 INLDSFLDLSSVISPFYI-WLFIFIIQPHKEERFMYPI 338


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 535 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 443
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,324
Number of Sequences: 5004
Number of extensions: 57358
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)