Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_A02
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    29   1.2  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   1.5  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    27   4.7  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.7  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    26   6.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   8.1  

>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = +2

Query: 686 MEGPINLPDVPKKPVTV-PEP 745
           +EG  N+PD+PK+P ++ P+P
Sbjct: 261 LEGDDNIPDLPKRPASIAPQP 281


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 662 AHPIPKSVMEGPI-NLPDVPKKPVTVPEPF 748
           + P P   M  PI N+P+VP  P   P PF
Sbjct: 354 SRPPPPPPMPAPIYNVPNVPTVPTVSPNPF 383


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/80 (21%), Positives = 33/80 (41%)
 Frame = +2

Query: 131 ETQKMAKNYVTNFRGESFFTPNAKMNIKDEPVTPIEEDFGEHNNLDSYENDYGSMRKSLS 310
           + +++  +Y      +S  TP   +  K    TP  E      + D +E+D     + + 
Sbjct: 89  QMERLNSSYDLLIEPQSHETPGKPLKKKSRSKTPKREIARRQRDEDEWESD--EYEEVVD 146

Query: 311 MNDIAALREDLVKLEFSDHD 370
            +    + ED V  +F +HD
Sbjct: 147 GSASHPIEEDSVSTDFQNHD 166


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 218 EPVTPIEEDFGEHNNLDSYENDYGSMRKSLSMNDIAAL 331
           + + P+ E  G+HN  DSY++   S RK +    +  L
Sbjct: 53  DKLQPLLETIGKHNLSDSYDHGRVSKRKMVGFAVVVVL 90


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 269 SYENDYGSMRKSLSMNDIAALREDLVKLEFSDHDDVYQ 382
           S+EN Y   RK+ S ND+     D    E  DHD+ ++
Sbjct: 23  SFENIYDPARKNESTNDVIDNHTD---TEIDDHDNDHE 57


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 212  KDEPVTPIEEDFGEHNNLDS--YENDYGSMRKSLSMNDIAALREDLVKLEFSDHDDV 376
            KDEP+   E+   E+N LD    ++D+  + +     +     E++ + E S  D V
Sbjct: 4124 KDEPMQDFEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGV 4180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,298
Number of Sequences: 5004
Number of extensions: 69469
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)