Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_A02
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z83221-3|CAB05705.1|  498|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF125956-1|AAV28359.1|  472|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    29   4.4  
AF067215-5|AAC17010.3|  441|Caenorhabditis elegans T box family ...    29   4.4  

>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
           protein K02B12.5 protein.
          Length = 1204

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 403 RCRSPISLVHIIMITEFQLNKIFTKGCNVVH 311
           RC+    L+ + ++TE QLNK   KG  V+H
Sbjct: 493 RCKEENELLKLDLLTEHQLNKTNDKGETVLH 523


>Z83221-3|CAB05705.1|  498|Caenorhabditis elegans Hypothetical
           protein C49A1.5 protein.
          Length = 498

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 9/44 (20%), Positives = 30/44 (68%)
 Frame = +2

Query: 230 PIEEDFGEHNNLDSYENDYGSMRKSLSMNDIAALREDLVKLEFS 361
           P++++   +++ D ++ ++GS+ +++   D+ A+ ED+ +++ S
Sbjct: 363 PVDKNGKRNHSRDLWKIEFGSLNETIREEDVRAIEEDINRMKNS 406


>AF125956-1|AAV28359.1|  472|Caenorhabditis elegans Hypothetical
           protein DC2.3b protein.
          Length = 472

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 437 SMAEAIYHYQRDTPGRFRSTKPQIFRTQGRAGPNGLT 547
           S  E ++H++ D P + +  KP + R   + G   LT
Sbjct: 368 SKGEFLFHFRVDMPNQAQKIKPHVIRNSSKNGVKWLT 404


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 233 IEEDFGEHNNLDSYENDYGSMRKSLSMNDIAALREDLVKLEFSDHDD 373
           + EDFG    LD++ N       S S++  AAL+ D      SD DD
Sbjct: 243 LTEDFGTFAQLDAHFNVSVQSCSSSSLSSPAALKHDSTVSSDSDFDD 289


>AF067215-5|AAC17010.3|  441|Caenorhabditis elegans T box family
           protein 32 protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 239 EDFGEHNNLDSYENDYGSMRKSLSMNDIAALREDLVKLEFSDHDD 373
           E+FG  + LD+Y N       S S++  AAL++D      +D DD
Sbjct: 245 EEFGTISQLDAYVNVNVQSCSSSSLSSPAALQQDSTVSSDNDFDD 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,589,656
Number of Sequences: 27780
Number of extensions: 384080
Number of successful extensions: 1083
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)