Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_A01
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 135 5e-32
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 135 5e-32
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 129 3e-30
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 31 1.5
12_02_0020 - 12388777-12389062,12389637-12389818 30 2.0
06_03_0930 - 26038341-26038508,26039114-26039254,26040799-260408... 30 2.6
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876... 29 3.5
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 28 8.1
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 135 bits (326), Expect = 5e-32
Identities = 59/95 (62%), Positives = 81/95 (85%)
Frame = +3
Query: 90 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 269
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 270 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRS 374
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKS 94
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 135 bits (326), Expect = 5e-32
Identities = 59/95 (62%), Positives = 81/95 (85%)
Frame = +3
Query: 90 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 269
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 270 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRS 374
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKS 94
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 129 bits (311), Expect = 3e-30
Identities = 56/95 (58%), Positives = 78/95 (82%)
Frame = +3
Query: 90 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 269
M++ K+NR I +YLF EGV+ AKKDY+ KH +++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 270 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRS 374
+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKS 94
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 120 IYEYLFKEGVMVA-KKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 296
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 297 TNEGIE-YLRIFLHLP 341
N + +L H P
Sbjct: 144 PNGSVSTHLHGSSHAP 159
>12_02_0020 - 12388777-12389062,12389637-12389818
Length = 155
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 368 ALXYVQRQYAVALXGRPDAPARSAEDRSAYRRTPAAP 478
A + A A+ GRP R E+RS +RTP+ P
Sbjct: 34 AAAHADADAAAAVIGRPKGEGREWEERSRSQRTPSPP 70
>06_03_0930 -
26038341-26038508,26039114-26039254,26040799-26040858,
26040972-26041034,26041444-26041454,26041722-26041802,
26042783-26043020,26043563-26043997
Length = 398
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 428 ARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 559
AR RS+ RR+P+ G A + G ++ L++ GG G G
Sbjct: 58 ARGKRSRSSRRRSPSGSGSAATKGRWARGSPASPLDYSGGSGSG 101
>06_01_1074 -
8765183-8765278,8765657-8765749,8766520-8766600,
8767092-8767173,8767261-8767313,8767391-8767456,
8767534-8767697,8768028-8768295
Length = 300
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 434 SAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 565
SA RS R TP P + PH K+A P S L G G P
Sbjct: 3 SAAPRS--RLTPPTPAMHPHRKRARSPPASGSLVRCSSSGNGAP 44
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -1
Query: 533 QDQLSLDQHQPFYHEVQHQGQQEYVCMQICPQQSGLGHQDDQ 408
Q Q L QHQ + Q Q QQ+ + Q QQ L Q Q
Sbjct: 41 QQQQKLPQHQHLQQQQQQQQQQQKLQQQQQQQQQKLQQQQQQ 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,526,979
Number of Sequences: 37544
Number of extensions: 371758
Number of successful extensions: 896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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