Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P23
         (984 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    31   0.19 
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    29   1.3  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    27   4.1  

>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 616 PIASKGAGGQVKPKNFSASQEGTRSAQSQRLKSGLNASPGGHTMSKARPPTHVRYW 449
           P +SKGAG + K +N S ++   +   S+ L+  L  S G H  S  +    +  W
Sbjct: 67  PSSSKGAGNEPKSQNSSTTRGSAKKQSSKGLEEKLINSYGTHVESLNKGRRLIEIW 122


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +3

Query: 246 RDYQATNMICPDGLHFNPSVEWPAYPCGYPVEVTCVG 356
           + ++ +  +C     + P+   PA P GY +++ C+G
Sbjct: 364 KKFKISVRVCSQRYPYPPNATKPATPLGYMLDICCIG 400


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 579 GFTCPPAPLDAIGNPLNNVINYKYEGNCYYFFS 677
           G T PP P +++ N +N     +     Y++ S
Sbjct: 340 GLTLPPVPTESVPNDINIYFGTRLPNEIYFYIS 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,390
Number of Sequences: 5004
Number of extensions: 73815
Number of successful extensions: 176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)