Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_P22
(925 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 93 3e-19
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 93 4e-19
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 56 5e-08
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 32 0.74
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 31 1.3
12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525 30 2.3
05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422 30 3.0
11_04_0025 + 12382485-12382823,12382835-12382894,12382960-123830... 29 3.9
02_02_0584 - 11853149-11853573,11853673-11853787,11853868-118539... 29 6.9
12_02_0124 + 13935314-13935420,13935605-13935986 28 9.1
04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292 28 9.1
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 93.1 bits (221), Expect = 3e-19
Identities = 43/70 (61%), Positives = 56/70 (80%)
Frame = +3
Query: 186 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 365
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ +L ++GLI+ V H
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDLMDRGLIRMVSVH 96
Query: 366 HGQVIYTRAT 395
Q IYTRAT
Sbjct: 97 CSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 92.7 bits (220), Expect = 4e-19
Identities = 43/70 (61%), Positives = 55/70 (78%)
Frame = +3
Query: 186 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 365
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ +L +GLI+ V H
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 96
Query: 366 HGQVIYTRAT 395
Q IYTRAT
Sbjct: 97 SSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 55.6 bits (128), Expect = 5e-08
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +3
Query: 186 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLK 290
+NN VLFDK TY+KL EVP+YK ITP+V+SERL+
Sbjct: 971 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +3
Query: 291 VRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 395
+ GSLAR+A+ +L +G I+ V H Q+IYTRAT
Sbjct: 1090 INGSLARQAIKDLESRGAIRVVSVHSSQLIYTRAT 1124
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 31.9 bits (69), Expect = 0.74
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 258 ITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 404
+TPAV E+ + + AR+ L + RE I+ +QH+ Q+++ +K D
Sbjct: 613 LTPAVYLEQHRFKLEKARQRLTDHRECQNIEATIQHNQQLVHVEKSKLD 661
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 77 REGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPGV 202
R G G + + E G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525
Length = 212
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 258 ITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 404
ITPAV E+ + + A++ L + RE+ I+ +Q + Q++Y +K D
Sbjct: 116 ITPAVYLEQHQFKLERAKQRLADRRERMDIEATIQANRQLVYEEKSKLD 164
>05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422
Length = 259
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/50 (28%), Positives = 30/50 (60%)
Frame = +3
Query: 255 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 404
++TPA E+ + + A++ L+E RE+ I+ +Q + Q+++ +K D
Sbjct: 167 VLTPAAYFEQHQFKLEKAKQRLVERRERKEIEATIQANRQLVHEEKSKLD 216
>11_04_0025 +
12382485-12382823,12382835-12382894,12382960-12383073,
12383187-12383837
Length = 387
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +3
Query: 255 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 404
+ITPA+ E+ + + A++ + + RE+ +I+ +Q + Q+++ K D
Sbjct: 237 IITPAIYLEQHQFKLEKAQQRIADRRERKVIEATIQANRQLVHEEKAKLD 286
>02_02_0584 -
11853149-11853573,11853673-11853787,11853868-11853981,
11854049-11854108,11854265-11854600,11854681-11854724,
11854776-11855507,11855736-11855921,11856012-11856153,
11856250-11856300
Length = 734
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 255 LITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGD 404
++TPAV E+ + + A+ L E RE+ I+ +Q + Q+++ +K D
Sbjct: 599 ILTPAVYLEQHQFKLKKAKLRLAERRERKDIEATIQANRQLVHEEKSKLD 648
>12_02_0124 + 13935314-13935420,13935605-13935986
Length = 162
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -3
Query: 854 PXPPPXXRGXXXXXRXRKGPQKXTPFPRGWPIX*CRKTSXTSPGPE 717
P P G + P+K P P+ + +KT+ T+P PE
Sbjct: 117 PNKTPVKTGVQVKQPVKPAPRKPPPTPKTKKVWQVKKTTSTTPAPE 162
>04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292
Length = 729
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 174 LFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSRPSWAASLNWKAK 40
+F W S L R+R+L + F+A+ P + SWAA L A+
Sbjct: 65 VFTWNCMVSGLIRNRMLAEARKVFDAM-PVRNSVSWAALLTGYAR 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,255,857
Number of Sequences: 37544
Number of extensions: 403479
Number of successful extensions: 1211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -