Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P22
         (925 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p pro...   161   2e-39
AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB...   161   2e-39
AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA...   161   2e-39
U03289-1|AAA03464.1|  113|Drosophila melanogaster protein ( Dros...   149   7e-36
BT003763-1|AAO41442.1|  652|Drosophila melanogaster RE39251p pro...    29   6.8  
AY069625-1|AAL39770.1|  268|Drosophila melanogaster LD39545p pro...    29   6.8  
AE014296-964|AAN12098.1|  682|Drosophila melanogaster CG10625-PC...    29   6.8  
AE014296-963|AAF50773.2|  682|Drosophila melanogaster CG10625-PB...    29   6.8  
AE014296-962|AAN12097.1|  268|Drosophila melanogaster CG10625-PD...    29   6.8  
AE014296-961|AAN12096.1|  268|Drosophila melanogaster CG10625-PA...    29   6.8  

>AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p
           protein.
          Length = 117

 Score =  161 bits (390), Expect = 2e-39
 Identities = 81/116 (69%), Positives = 86/116 (74%)
 Frame = +3

Query: 60  MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKE 239
           MPPKKDAK+SAKQPQ                           LNNQVLFDK TYEKLYKE
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60

Query: 240 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 407
           VP YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 61  VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB,
           isoform B protein.
          Length = 117

 Score =  161 bits (390), Expect = 2e-39
 Identities = 81/116 (69%), Positives = 86/116 (74%)
 Frame = +3

Query: 60  MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKE 239
           MPPKKDAK+SAKQPQ                           LNNQVLFDK TYEKLYKE
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60

Query: 240 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 407
           VP YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 61  VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA,
           isoform A protein.
          Length = 117

 Score =  161 bits (390), Expect = 2e-39
 Identities = 81/116 (69%), Positives = 86/116 (74%)
 Frame = +3

Query: 60  MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKE 239
           MPPKKDAK+SAKQPQ                           LNNQVLFDK TYEKLYKE
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60

Query: 240 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 407
           VP YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 61  VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>U03289-1|AAA03464.1|  113|Drosophila melanogaster protein (
           Drosophila melanogasterSevelin ribosomal protein homolog
           gene, partial cds. ).
          Length = 113

 Score =  149 bits (360), Expect = 7e-36
 Identities = 76/112 (67%), Positives = 81/112 (72%)
 Frame = +3

Query: 72  KDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKEVPQY 251
           KDAK+SAKQPQ                           LNNQVLFDK TYEKLYKEVP Y
Sbjct: 1   KDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAY 60

Query: 252 KLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 407
           KLITP+VVSERLK+RGSL +RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 61  KLITPSVVSERLKIRGSLDKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 112


>BT003763-1|AAO41442.1|  652|Drosophila melanogaster RE39251p
           protein.
          Length = 652

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 21/63 (33%), Positives = 21/63 (33%)
 Frame = -3

Query: 908 PGNPXXWGNPIXPLXEXXPXPPPXXRGXXXXXRXRKGPQKXTPFPRGWPIX*CRKTSXTS 729
           PG P   G P  P     P  PP   G        KGP K  PF    P         T 
Sbjct: 504 PGGPKGPGGPKGPNGPNGPPGPPGPPGPPGPP-GPKGPTKPGPFGPPGPPGPPGPPGPTR 562

Query: 728 PGP 720
           PGP
Sbjct: 563 PGP 565


>AY069625-1|AAL39770.1|  268|Drosophila melanogaster LD39545p
           protein.
          Length = 268

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 21/63 (33%), Positives = 21/63 (33%)
 Frame = -3

Query: 908 PGNPXXWGNPIXPLXEXXPXPPPXXRGXXXXXRXRKGPQKXTPFPRGWPIX*CRKTSXTS 729
           PG P   G P  P     P  PP   G        KGP K  PF    P         T 
Sbjct: 120 PGGPKGPGGPKGPNGPNGPPGPPGPPGPPGPP-GPKGPTKPGPFGPPGPPGPPGPPGPTR 178

Query: 728 PGP 720
           PGP
Sbjct: 179 PGP 181


>AE014296-964|AAN12098.1|  682|Drosophila melanogaster CG10625-PC,
           isoform C protein.
          Length = 682

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 21/63 (33%), Positives = 21/63 (33%)
 Frame = -3

Query: 908 PGNPXXWGNPIXPLXEXXPXPPPXXRGXXXXXRXRKGPQKXTPFPRGWPIX*CRKTSXTS 729
           PG P   G P  P     P  PP   G        KGP K  PF    P         T 
Sbjct: 534 PGGPKGPGGPKGPNGPNGPPGPPGPPGPPGPP-GPKGPTKPGPFGPPGPPGPPGPPGPTR 592

Query: 728 PGP 720
           PGP
Sbjct: 593 PGP 595


>AE014296-963|AAF50773.2|  682|Drosophila melanogaster CG10625-PB,
           isoform B protein.
          Length = 682

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 21/63 (33%), Positives = 21/63 (33%)
 Frame = -3

Query: 908 PGNPXXWGNPIXPLXEXXPXPPPXXRGXXXXXRXRKGPQKXTPFPRGWPIX*CRKTSXTS 729
           PG P   G P  P     P  PP   G        KGP K  PF    P         T 
Sbjct: 534 PGGPKGPGGPKGPNGPNGPPGPPGPPGPPGPP-GPKGPTKPGPFGPPGPPGPPGPPGPTR 592

Query: 728 PGP 720
           PGP
Sbjct: 593 PGP 595


>AE014296-962|AAN12097.1|  268|Drosophila melanogaster CG10625-PD,
           isoform D protein.
          Length = 268

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 21/63 (33%), Positives = 21/63 (33%)
 Frame = -3

Query: 908 PGNPXXWGNPIXPLXEXXPXPPPXXRGXXXXXRXRKGPQKXTPFPRGWPIX*CRKTSXTS 729
           PG P   G P  P     P  PP   G        KGP K  PF    P         T 
Sbjct: 120 PGGPKGPGGPKGPNGPNGPPGPPGPPGPPGPP-GPKGPTKPGPFGPPGPPGPPGPPGPTR 178

Query: 728 PGP 720
           PGP
Sbjct: 179 PGP 181


>AE014296-961|AAN12096.1|  268|Drosophila melanogaster CG10625-PA,
           isoform A protein.
          Length = 268

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 21/63 (33%), Positives = 21/63 (33%)
 Frame = -3

Query: 908 PGNPXXWGNPIXPLXEXXPXPPPXXRGXXXXXRXRKGPQKXTPFPRGWPIX*CRKTSXTS 729
           PG P   G P  P     P  PP   G        KGP K  PF    P         T 
Sbjct: 120 PGGPKGPGGPKGPNGPNGPPGPPGPPGPPGPP-GPKGPTKPGPFGPPGPPGPPGPPGPTR 178

Query: 728 PGP 720
           PGP
Sbjct: 179 PGP 181


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,630,937
Number of Sequences: 53049
Number of extensions: 662096
Number of successful extensions: 1898
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1862
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4546383066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)