Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P19
         (1032 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.81 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.81
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -1

Query: 627 PPXGXXPPPPPXGGGXXXXXXXXPPXKXXXPPPP 526
           PP    PPPPP G          PP +   PPPP
Sbjct: 5   PPGNPPPPPPPPG--------FEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -1

Query: 609 PPPPPXGGGXXXXXXXXPPXKXXXPPPP 526
           PPPPP            PP     PPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = -1

Query: 609 PPPPPXGGGXXXXXXXXPPXKXXXPPPP 526
           PPPPP            P  +   PPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -1

Query: 630 PPPXGXXPPPPPXGGGXXXXXXXXPPXKXXXPPPP 526
           P P    PPPPP   G        PP     PPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPP-----PPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,707
Number of Sequences: 5004
Number of extensions: 25254
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 539240220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)