Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P18
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      55   8e-10
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          49   5e-08
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   8.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 55.2 bits (127), Expect = 8e-10
 Identities = 23/49 (46%), Positives = 35/49 (71%)
 Frame = +1

Query: 244 FHANMSAGFHGLLSRGDLVXVTLAAEGRLLQAHKLVLSVCSPYFQEMFK 390
           + +++++ F  L    D V VTLA +GR L+AH++VLS CSPYF+E+ K
Sbjct: 14  YQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLK 62


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 49.2 bits (112), Expect = 5e-08
 Identities = 23/47 (48%), Positives = 31/47 (65%)
 Frame = +1

Query: 244 FHANMSAGFHGLLSRGDLVXVTLAAEGRLLQAHKLVLSVCSPYFQEM 384
           + +NM++ FH LL     V VTLA     L+AHK+VLS CS YFQ++
Sbjct: 18  YQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKL 64



 Score = 30.3 bits (65), Expect = 0.025
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +2

Query: 422 KDVSHSALRNLLQFMYXGEXNVKQXKLXSLL 514
           +DV  + L+ +++F+Y GE +V Q +L SLL
Sbjct: 79  QDVCFNDLKFIIEFVYRGEIDVSQAELQSLL 109


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 389 NESNTTSDSILKDVSHSALRNLLQFMYXGEXN 484
           + +NT S+S L+D   +    +    Y GE N
Sbjct: 545 DSANTISNSSLQDYDETEFNGMELARYMGELN 576


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 183 FHVESSLSWRRTNNFHY 233
           +   +S SWR TNN  Y
Sbjct: 211 YDFRNSRSWRITNNLFY 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,917
Number of Sequences: 438
Number of extensions: 3833
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)