Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P17
         (935 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    31   0.23 
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    27   3.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   5.0  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   8.8  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   8.8  

>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -2

Query: 274 CIFAQKNTKKNVQRNIAITKTFLSKQIDFIVLIKF*NYQCNRLFTYLAASENKIS 110
           C + QK   +N + N ++    + + +  +++  F NY C +LF Y A+ E K+S
Sbjct: 477 CRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVY-ASREQKLS 530


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 455 LFWSWISRRDVIYHFQIALIRYSFVMISAVN*INMTQSALHMQWPHF 315
           +FW W  RR +   F IAL  +S + I ++  + M    L +  P F
Sbjct: 49  IFWRWSRRRTIREQFHIAL--FSVLFIRSI--VQMIHPCLALSDPFF 91


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 476  WPHIDARALGYIGSLQTTSLCVXPMFSIYLGGRACHPTYFQSKAIRVQR 622
            +P++     GY  S+Q  +L    M S+ L    C P  F+SK +   R
Sbjct: 1748 YPYVILNQTGYNLSIQYGNLNSSEMQSLSLPSGKCVPCRFESKEVLTSR 1796


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 224 GYIPLYIFLSVFL-GKYANFKLEWSRHRPDIK 316
           GY PLY +      G+Y++FKL+  R R ++K
Sbjct: 642 GYWPLYRWTPALEDGEYSDFKLDSERIRRELK 673


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 121 NKISKPDQ--FQISKLLCYYRSHTSYLTPNLKDSL 23
           N+I KPD   F + K   + + + SYLTP L   L
Sbjct: 396 NEILKPDSNHFVLEKFHEFLKINFSYLTPTLSQKL 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,844
Number of Sequences: 5004
Number of extensions: 71014
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)