Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P17
         (935 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47358-6|CAA87436.1|  356|Caenorhabditis elegans Hypothetical pr...    41   0.001
AJ005864-1|CAA06741.1|  356|Caenorhabditis elegans Sqv-8 protein...    41   0.001
AL009246-3|CAA15837.1|  248|Caenorhabditis elegans Hypothetical ...    38   0.010
Z81147-1|CAB03531.1|  325|Caenorhabditis elegans Hypothetical pr...    36   0.042
AJ972874-1|CAI99632.1|  288|Caenorhabditis elegans beta-1,3-gluc...    36   0.042
Z83125-11|CAB05617.2|  320|Caenorhabditis elegans Hypothetical p...    32   0.51 
AJ972875-1|CAI99633.1|  304|Caenorhabditis elegans beta-1,3-gluc...    32   0.51 
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    30   2.7  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    30   2.7  
AL021503-3|CAA16423.1|  324|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z81492-8|CAB04033.1|  226|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z47358-6|CAA87436.1|  356|Caenorhabditis elegans Hypothetical
           protein ZK1307.5 protein.
          Length = 356

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +2

Query: 623 YNFPRGVSNXRAXLVWLREN---VXKGXMYFGDDDNXVXLXLFHENKGYQXRFHVSRRGH 793
           +  PRGV      L+W++     V +G +YFGDDDN   L +F E +       V   G 
Sbjct: 174 WTLPRGVEQRNRALLWIQNQLSGVKEGVVYFGDDDNTYDLKIFGEMR------KVKNAGV 227

Query: 794 WGYGI 808
           W  GI
Sbjct: 228 WPVGI 232



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +3

Query: 417 IYYITPTYPRPEQIPELTRLGHTLMHVPS 503
           IY+ITPT+ R  Q  +LTRL +TL HVP+
Sbjct: 99  IYFITPTHFRAAQRADLTRLSYTLSHVPN 127


>AJ005864-1|CAA06741.1|  356|Caenorhabditis elegans Sqv-8 protein
           protein.
          Length = 356

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +2

Query: 623 YNFPRGVSNXRAXLVWLREN---VXKGXMYFGDDDNXVXLXLFHENKGYQXRFHVSRRGH 793
           +  PRGV      L+W++     V +G +YFGDDDN   L +F E +       V   G 
Sbjct: 174 WTLPRGVEQRNRALLWIQNQLSGVKEGVVYFGDDDNTYDLKIFGEMR------KVKNAGV 227

Query: 794 WGYGI 808
           W  GI
Sbjct: 228 WPVGI 232



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +3

Query: 417 IYYITPTYPRPEQIPELTRLGHTLMHVPS 503
           IY+ITPT+ R  Q  +LTRL +TL HVP+
Sbjct: 99  IYFITPTHFRAAQRADLTRLSYTLSHVPN 127


>AL009246-3|CAA15837.1|  248|Caenorhabditis elegans Hypothetical
           protein C47F8.4 protein.
          Length = 248

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +3

Query: 414 MIYYITPTYPRPEQIPELTRLGHTLMHV 497
           M+  +TPTY R  +IP++TRL +TL HV
Sbjct: 1   MVIVVTPTYKRITRIPDMTRLANTLAHV 28


>Z81147-1|CAB03531.1|  325|Caenorhabditis elegans Hypothetical
           protein T09E11.1 protein.
          Length = 325

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +3

Query: 411 KMIYYITPTYPRPEQIPELTRLGHTLMHV 497
           + I  ITPTY R  ++P++TRL +TL HV
Sbjct: 39  RTIIVITPTYRRINRMPDITRLSNTLSHV 67



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 671 LRENVXKGXMYFGDDDNXVXLXLFHE 748
           L  ++ +G +YF DDDN   L LF++
Sbjct: 130 LNTDLREGVVYFADDDNSYDLRLFND 155


>AJ972874-1|CAI99632.1|  288|Caenorhabditis elegans
           beta-1,3-glucuronosyltransferase protein.
          Length = 288

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +3

Query: 411 KMIYYITPTYPRPEQIPELTRLGHTLMHV 497
           + I  ITPTY R  ++P++TRL +TL HV
Sbjct: 39  RTIIVITPTYRRINRMPDITRLSNTLSHV 67



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 671 LRENVXKGXMYFGDDDNXVXLXLFHE 748
           L  ++ +G +YF DDDN   L LF++
Sbjct: 130 LNTDLREGVVYFADDDNSYDLRLFND 155


>Z83125-11|CAB05617.2|  320|Caenorhabditis elegans Hypothetical
           protein T15D6.7 protein.
          Length = 320

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 411 KMIYYITPTYPRPEQIPELTRLGHTLMHV 497
           +MI  ITPTY R  ++ ++TRL +TL  V
Sbjct: 58  RMIIVITPTYKRITRLADITRLANTLSQV 86


>AJ972875-1|CAI99633.1|  304|Caenorhabditis elegans
           beta-1,3-glucuronosyltransferase protein.
          Length = 304

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 411 KMIYYITPTYPRPEQIPELTRLGHTLMHV 497
           +MI  ITPTY R  ++ ++TRL +TL  V
Sbjct: 58  RMIIVITPTYKRITRLADITRLANTLSQV 86


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 267  NMQILNLNGVDTALISKMRPLHVKSRLCHVNLI 365
            N++ILNL  VDT L+SK +  HV   +    L+
Sbjct: 3682 NLKILNLPPVDTLLVSKYKESHVSKTVEEQELV 3714


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 267  NMQILNLNGVDTALISKMRPLHVKSRLCHVNLI 365
            N++ILNL  VDT L+SK +  HV   +    L+
Sbjct: 3682 NLKILNLPPVDTLLVSKYKESHVSKTVEEQELV 3714


>AL021503-3|CAA16423.1|  324|Caenorhabditis elegans Hypothetical
           protein Y68A4A.6 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -2

Query: 349 HNLLFTCSGLIFDIRAVSTPFKFKICIFAQKNTKKNVQRNIAITKTFLSKQIDFI 185
           HN +F  S L+   R +S PF F++ +F +  T       + +  T L  Q+ ++
Sbjct: 227 HNYIFFQSFLLLLFRLISLPFLFQLVVFDKLGTFLMAMTIVDVVTTPLIIQLSYL 281


>Z81492-8|CAB04033.1|  226|Caenorhabditis elegans Hypothetical
           protein E03H4.12 protein.
          Length = 226

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 505 IHWIIADDQSLCSXNVLNLLRRTGLP 582
           +HWI+ +D       V N+L R+GLP
Sbjct: 11  LHWIVIEDGEELVPAVQNVLERSGLP 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,708,513
Number of Sequences: 27780
Number of extensions: 420372
Number of successful extensions: 996
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)