Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_P16
(975 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 59 1e-07
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 55 3e-06
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 50 9e-05
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 50 9e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 42 0.024
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 37 0.68
UniRef50_Q2IP95 Cluster: TonB-like; n=1; Anaeromyxobacter dehalo... 35 2.7
UniRef50_Q18265 Cluster: Putative uncharacterized protein; n=2; ... 34 4.8
UniRef50_Q6C961 Cluster: 5'-3' exoribonuclease 2; n=1; Yarrowia ... 34 4.8
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 59.3 bits (137), Expect = 1e-07
Identities = 30/36 (83%), Positives = 30/36 (83%)
Frame = +2
Query: 416 TDSLRSVVRLRXAVSAHSKAVIRXSXXSGDNXGXNM 523
TDSLRSVVRLR AVSAHSKAVIR S SGDN G NM
Sbjct: 24 TDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 54.8 bits (126), Expect = 3e-06
Identities = 34/67 (50%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = -2
Query: 611 MLVRGXXXMXXRQQPGPFYGSWXFXXLX--VTCXFLXYPLXXXXTVLPPLSELIPLXAAE 438
MLVRG M R + W L +TC F YPL TVLPPLSEL PL A E
Sbjct: 1 MLVRGAEPMEKRLR------CWLLPVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVE 54
Query: 437 RPSAASQ 417
RPS ASQ
Sbjct: 55 RPSVASQ 61
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 50.0 bits (114), Expect = 9e-05
Identities = 28/57 (49%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 345 CINESANARGEAVXVLGALXLPPTLTRCARSFGCGERYQL-TQRR*YGXPXXQGITQ 512
CI + A AR EAV VL AL L + TRC RS GCG + R YG P QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 50.0 bits (114), Expect = 9e-05
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +1
Query: 337 VISALMNRPTRGERRXAYWALXRFLPH 417
V +ALMNRPTRGERR AYWAL RFL H
Sbjct: 23 VPAALMNRPTRGERRFAYWALFRFLAH 49
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 41.9 bits (94), Expect = 0.024
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +3
Query: 393 GALXLPPTLTRCARSFGCGERYQLT 467
G + LP +LTR ARSFGCGERY+LT
Sbjct: 34 GDIPLPRSLTRYARSFGCGERYRLT 58
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 37.1 bits (82), Expect = 0.68
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = -3
Query: 397 APNTXTASPRALADSLMQ 344
APNT TASPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348
>UniRef50_Q2IP95 Cluster: TonB-like; n=1; Anaeromyxobacter
dehalogenans 2CP-C|Rep: TonB-like - Anaeromyxobacter
dehalogenans (strain 2CP-C)
Length = 241
Score = 35.1 bits (77), Expect = 2.7
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = -3
Query: 832 LTXGXGNTLQGWXXGXGPXLPGRGVXAGSGFPGXXAGXG 716
LT G G G G GP +PG G G G G AG G
Sbjct: 106 LTLGEGQAFTGDGVGDGPFVPGDGFGPGGGGAGGEAGDG 144
>UniRef50_Q18265 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 448
Score = 34.3 bits (75), Expect = 4.8
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -3
Query: 823 GXGNTLQGWXXGXGPXLPGRGVXAGSGFPGXXAGXGXRGAHRGXFQGGNR 674
G G G+ G G G G GF G G G RG RG F+GG+R
Sbjct: 317 GFGGDRGGYGGGGGRGGFDGGRGGGGGFRGGDRG-GFRGGDRGGFRGGDR 365
>UniRef50_Q6C961 Cluster: 5'-3' exoribonuclease 2; n=1; Yarrowia
lipolytica|Rep: 5'-3' exoribonuclease 2 - Yarrowia
lipolytica (Candida lipolytica)
Length = 1010
Score = 34.3 bits (75), Expect = 4.8
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -3
Query: 802 GWXXGXGPXLPGRGVXAGSGFPGXXAGXGXRGAHRGXFQGG 680
G G G G G G G+ G G G G HRG +GG
Sbjct: 964 GQGYGGGQGYGGGGYGGGQGYGGGGYGGGYGGGHRGGHRGG 1004
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,466,569
Number of Sequences: 1657284
Number of extensions: 8984625
Number of successful extensions: 22590
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21888
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 91040045921
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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