Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P16
         (975 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    31   0.33 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   0.99 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.3  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -3

Query: 802 GWXXGXGPXLPGRGVXAGSGFPGXXAGX---GXRGAHRGXFQGGNR 674
           G+  G G    G G  +  GF G   G    G RG  RG F+GG+R
Sbjct: 142 GFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSR 187


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -3

Query: 802 GWXXGXGPXLPGRGVXAGSGFPGXXAGXGXRGAHRGXFQGGN 677
           G+  G G    GRG   G G  G   G G RG  RG  +GG+
Sbjct: 20  GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG-RGGS 60


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 898 PXPGXXGGXXPPPXPPXFFPXXGG 969
           P PG  G   PPP PP      GG
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,383,876
Number of Sequences: 5004
Number of extensions: 28491
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)