Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_P16
(975 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_07_0007 - 27262229-27262638,27263252-27263312 31 1.4
09_02_0274 + 6611555-6611615,6612229-6612638 31 1.4
07_03_0558 + 19461369-19462448 31 1.4
01_01_0073 + 555485-556315 31 1.8
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 2.4
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 2.4
06_01_0145 + 1092764-1093351 30 3.2
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 3.2
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 29 4.2
07_01_0479 + 3606663-3607448 29 7.4
06_02_0175 - 12624608-12625297 29 7.4
01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983 29 7.4
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 28 9.8
06_03_1326 - 29355467-29355817 28 9.8
06_02_0122 - 12095385-12095713,12096018-12096120 28 9.8
05_03_0163 + 9070781-9071320 28 9.8
>11_07_0007 - 27262229-27262638,27263252-27263312
Length = 156
Score = 31.1 bits (67), Expect = 1.4
Identities = 21/50 (42%), Positives = 22/50 (44%)
Frame = -3
Query: 823 GXGNTLQGWXXGXGPXLPGRGVXAGSGFPGXXAGXGXRGAHRGXFQGGNR 674
G G L G G G +PG G G G PG G G G H G GG R
Sbjct: 54 GGGGRLAGHGHGGG-GIPGGGQSGGIGAPG--GGCGGAG-HGGGSAGGGR 99
>09_02_0274 + 6611555-6611615,6612229-6612638
Length = 156
Score = 31.1 bits (67), Expect = 1.4
Identities = 21/50 (42%), Positives = 22/50 (44%)
Frame = -3
Query: 823 GXGNTLQGWXXGXGPXLPGRGVXAGSGFPGXXAGXGXRGAHRGXFQGGNR 674
G G L G G G +PG G G G PG G G G H G GG R
Sbjct: 54 GGGGRLAGHGHGGG-GIPGGGQSGGIGAPG--GGCGGAG-HGGGSAGGGR 99
>07_03_0558 + 19461369-19462448
Length = 359
Score = 31.1 bits (67), Expect = 1.4
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = -3
Query: 805 QGWXXGXGPXLPGRGVXAGSGFPGXXAGXGXRGAHRGXFQGG 680
QG G G G G+ G GF G G G G H G F GG
Sbjct: 223 QGGGFGAGGGAGG-GIGGGGGF-GGGGGGGLGGGHGGGFGGG 262
Score = 30.3 bits (65), Expect = 2.4
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -3
Query: 769 GRGVXAGSGFPGXXAGXGXRGAHRGXFQGG 680
G GV G GF G G G G H G F GG
Sbjct: 166 GGGVGGGGGF-GGGGGGGLGGGHGGGFGGG 194
>01_01_0073 + 555485-556315
Length = 276
Score = 30.7 bits (66), Expect = 1.8
Identities = 22/62 (35%), Positives = 23/62 (37%)
Frame = -3
Query: 823 GXGNTLQGWXXGXGPXLPGRGVXAGSGFPGXXAGXGXRGAHRGXFQGGNRLESFIVXXGX 644
G G G G G G G GF G AG G G G GGN + V G
Sbjct: 129 GLGGGKSAGDDGGGDAATG-GCCTGDGFGGVVAGVGGTGTEAGGDGGGNVADG--VGGGD 185
Query: 643 AT 638
AT
Sbjct: 186 AT 187
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 30.3 bits (65), Expect = 2.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 898 PXPGXXGGXXPPPXPPXFFP 957
P PG GG PPP PP P
Sbjct: 933 PPPGKPGGPPPPPPPPGSLP 952
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.3 bits (65), Expect = 2.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 898 PXPGXXGGXXPPPXPPXFFPXXGGP 972
P P GG PPP PP GGP
Sbjct: 1174 PPPNAHGGVAPPPPPPRGHGGVGGP 1198
>06_01_0145 + 1092764-1093351
Length = 195
Score = 29.9 bits (64), Expect = 3.2
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 769 GRGVXAGSG-FPGXXAGXGXRGAHRGXFQGGNR 674
GRG GSG F G G G RG G +GG R
Sbjct: 148 GRGGRGGSGGFGGGDGGRGGRGGDGGEGRGGGR 180
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.9 bits (64), Expect = 3.2
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 975 PGPPPXGEKXGXXRGGXPXPXXPG 904
PGPPP G GG P P PG
Sbjct: 368 PGPPPPPGAAGRGGGGPPPPALPG 391
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 29.5 bits (63), Expect = 4.2
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -3
Query: 817 GNTLQGWXXGXGPXLPGRGVXAGSGFPGXXAGXGXRGAHRGXFQGG 680
G + +G G P G G GFPG G G G G F GG
Sbjct: 525 GASPRGGFPGGMPGGGFPGGMPGGGFPGGMPGGGFPGGMPGGFPGG 570
>07_01_0479 + 3606663-3607448
Length = 261
Score = 28.7 bits (61), Expect = 7.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 895 GPXPGXXGGXXPPPXPPXFFPXXGGP 972
GP PG G PPP P P GP
Sbjct: 227 GPPPGMRPGMPPPPFRPGMPPPPPGP 252
>06_02_0175 - 12624608-12625297
Length = 229
Score = 28.7 bits (61), Expect = 7.4
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = -3
Query: 823 GXGNTLQGWXXGXGPXLPGRGVXAGSGFPGXXAGXGXRGAHRGXFQGG 680
G + GW G G G G G G G G G G G GG
Sbjct: 77 GGSSWSYGWGWGWGTDSGGGGSSGGGGGGGGGGGGGGGGGGGGGGGGG 124
>01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983
Length = 448
Score = 28.7 bits (61), Expect = 7.4
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = -3
Query: 823 GXGNTLQGWXXGXGPXLPGRGVXAGSGFPGXXAGXGXRGAHRGXFQGG 680
G G + G G G + G GFPG G G G G F GG
Sbjct: 297 GIGGSTGGGGRGAGAGVGGITGGGDGGFPG-GGGGGFSGGGGGGFPGG 343
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.3 bits (60), Expect = 9.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 968 PPXXGKXWGGXGGGXXPPXFPGXG 897
P G +GG GGG PP + G G
Sbjct: 52 PGGRGGGYGGGGGGGGPPYYGGGG 75
>06_03_1326 - 29355467-29355817
Length = 116
Score = 28.3 bits (60), Expect = 9.8
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -3
Query: 802 GWXXGXGPXLPGRGVXAGSGFPGXXAGXGXRGAHRGXFQGGN 677
G G G G+G GSG G G G G +G +GG+
Sbjct: 11 GGKGGGGGGGGGKGGGGGSGGGGRSGGGGGGGGGKGGGEGGS 52
Score = 28.3 bits (60), Expect = 9.8
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -3
Query: 823 GXGNTLQGWXXGXGPXLPGRGVXAGSGFPGXXAGXGXRGAHRGXFQGGN 677
G G G G G GR G G G G G G + G + GG+
Sbjct: 15 GGGGGGGGKGGGGGSGGGGRSGGGGGGGGGKGGGEGGSGKYGGGYSGGH 63
>06_02_0122 - 12095385-12095713,12096018-12096120
Length = 143
Score = 28.3 bits (60), Expect = 9.8
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -3
Query: 823 GXGNTLQGWXXGXGPXLPGRGVXAGSGFPGXXAGXGXRGAHRGXFQGG 680
G G G+ G G GRG G G G G G G + G + GG
Sbjct: 84 GGGYGHPGYGGGYGGGY-GRGYGGGYGGSGGGYGGGYGGGYGGGYGGG 130
>05_03_0163 + 9070781-9071320
Length = 179
Score = 28.3 bits (60), Expect = 9.8
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -3
Query: 823 GXGNTLQGWXXGXGPXLPGRGVXAGSGFPGXXAGXGXRGAHRGXFQGG 680
G G + +G G P PG G A G G +G G R +G GG
Sbjct: 43 GGGRSRRGTGRGRWPE-PGEGAAAVVGADGGGSGDGGRSRIQGMGGGG 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,043,201
Number of Sequences: 37544
Number of extensions: 311677
Number of successful extensions: 1256
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2834967080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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