Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P15
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    27   2.9  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    27   5.1  

>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 148 PPAVAPGPRDPSHMLGRSRCTRVXLAQSRCAARVPKS*GFPIVNRK 11
           PPA +P    P  ++ R     + +    C A VP   G+P++ RK
Sbjct: 199 PPACSP----PIELVNRWYAEPIEMITMSCMAFVPNPNGYPVLGRK 240


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = +2

Query: 14  TIXYRESLRF--W-HSGSAAGLCQXYPRATRPPQHVAGVAWARCDGRRRPATSLGLWTGR 184
           TI  + +++F  W  +G   G+C       RPPQH+ G   A+ D   R    L   T  
Sbjct: 334 TIKAKRTIQFVDWCPTGFKIGICD------RPPQHIEGSEIAKVD---RAVCMLSNTTSI 384

Query: 185 ATDVTRLD---DSRPDKRAYP*W 244
           A   +RLD   D    KRA+  W
Sbjct: 385 AEAWSRLDHKFDLMYSKRAFVHW 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,364
Number of Sequences: 5004
Number of extensions: 43626
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)