Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P15
         (942 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0534 - 4635122-4635380,4635716-4635837                           31   1.3  
04_04_0592 + 26477974-26479311                                         28   9.4  
01_06_1387 + 36944138-36944147,36944272-36944333,36944825-369448...    28   9.4  

>08_01_0534 - 4635122-4635380,4635716-4635837
          Length = 126

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 113 AGVAWARCDGRRRPATSLGLWTGRATDVTR 202
           +GV W  C GR    +++G WTG A + TR
Sbjct: 71  SGVKWKSCGGRTGSRSAVGRWTG-AVEATR 99


>04_04_0592 + 26477974-26479311
          Length = 445

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 126 HATPATCWGGRVARGXXWHSPAALPECQNLKDSL 25
           + TPA  W G V RG    SP ++P  QNL + L
Sbjct: 228 NGTPAEAWLGAVQRGDV--SPGSIPLGQNLSNLL 259


>01_06_1387 +
           36944138-36944147,36944272-36944333,36944825-36944865,
           36945217-36945286,36946146-36946826,36946907-36946981,
           36947057-36947163,36947264-36947370,36947463-36947522,
           36947616-36947689,36947788-36947838,36948009-36948058,
           36948079-36948123,36948161-36948221,36948284-36948349,
           36948700-36948789,36948875-36948940,36949039-36949134,
           36949219-36949308,36949371-36949388
          Length = 639

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 153 GRRRPSHRAHATPATCWGGRVARGXXWHSPAALPECQNLK 34
           G R P+ R  A        RV R    H P  +P+C+N K
Sbjct: 76  GNRHPTKRQAAPHEPSPSRRVTRRVSVHIPPQIPQCRNRK 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,595,339
Number of Sequences: 37544
Number of extensions: 309529
Number of successful extensions: 865
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)