Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_P14
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 143 4e-35
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 84 3e-17
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 74 2e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 71 2e-13
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 62 1e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 60 4e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 60 6e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 60 6e-10
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 58 1e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 58 2e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 57 4e-09
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 52 1e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 49 8e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 46 7e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 45 2e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 45 2e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 44 3e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 44 4e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 36 0.008
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 36 0.011
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 36 0.011
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.30
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.30
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.39
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.69
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 1.2
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 28 1.6
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 28 2.1
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 4.9
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 4.9
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 6.4
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 6.4
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 8.5
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 8.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 143 bits (346), Expect = 4e-35
Identities = 63/117 (53%), Positives = 84/117 (71%)
Frame = +3
Query: 297 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 476
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 477 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 647
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHI
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHI 184
Score = 63.7 bits (148), Expect = 3e-11
Identities = 34/71 (47%), Positives = 39/71 (54%)
Frame = +2
Query: 644 H*ITKPPIRRXDGPIALVLAPTRELAQQIQQVAAXFGPTSYVRNTCVFWGVXXXXXXXXX 823
H +P + DGPI LVLAPTRELA QIQQ FG +S +RNTCV+ GV
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDL 242
Query: 824 XXXXXIXIXTP 856
I I TP
Sbjct: 243 IRGVEICIATP 253
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 83.8 bits (198), Expect = 3e-17
Identities = 39/114 (34%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Frame = +3
Query: 312 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 488
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 489 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHIK 650
+ ++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HIK
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIK 481
Score = 40.3 bits (90), Expect = 4e-04
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 662 PIRRXDGPIALVLAPTRELAQQIQQVAAXFGPTSYVRNTCVFWGVXXXXXXXXXXXXXXI 841
P++ +GPIA+++ PTRELA QI + F +R C + G I
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEI 544
Query: 842 XIXTP 856
+ TP
Sbjct: 545 VVCTP 549
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 74.1 bits (174), Expect = 2e-14
Identities = 30/80 (37%), Positives = 54/80 (67%)
Frame = +3
Query: 408 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 587
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 588 VAQTGSGKTLAYILPAIVHI 647
+A+TGSGKT A+I+P I+ I
Sbjct: 292 IAETGSGKTAAFIIPLIIAI 311
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +2
Query: 680 GPIALVLAPTRELAQQIQ 733
GP A+VLAPTRELAQQIQ
Sbjct: 325 GPYAVVLAPTRELAQQIQ 342
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 71.3 bits (167), Expect = 2e-13
Identities = 33/86 (38%), Positives = 57/86 (66%), Gaps = 3/86 (3%)
Frame = +3
Query: 399 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 569
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 570 GKNLVGVAQTGSGKTLAYILPAIVHI 647
G+++VG+A+TGSGKT+A+ +PA+ ++
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYL 227
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 62.1 bits (144), Expect = 1e-10
Identities = 28/72 (38%), Positives = 42/72 (58%)
Frame = +3
Query: 423 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 602
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 603 SGKTLAYILPAI 638
SGKT ++ P +
Sbjct: 217 SGKTAGFLFPIL 228
Score = 33.9 bits (74), Expect = 0.032
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +2
Query: 683 PIALVLAPTRELAQQIQQVAAXFGPTSYVRNTCVFWG 793
P L+LAPTREL QI + + F S+VR V+ G
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGG 292
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 60.1 bits (139), Expect = 4e-10
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Frame = +3
Query: 465 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 644
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 645 IK*PNRLFGXVMVRLLWSWR-LPES*HNKFSKLLXILDPHLMFVTRVCFGGCS*KXQAPD 821
+ + V +L R L H+ +K+ D + +C GG S K Q +
Sbjct: 321 LLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTD----IMVCLCIGGLSLKLQEQE 376
Query: 822 L 824
L
Sbjct: 377 L 377
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 59.7 bits (138), Expect = 6e-10
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +3
Query: 465 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 644
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 645 I-K*PNRLFGXVM 680
+ P+ F V+
Sbjct: 108 LWNNPSPFFAVVL 120
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 689 ALVLAPTRELAQQIQQVAAXFGPTSYVRNTCVFWGVXXXXXXXXXXXXXXIXIXTP 856
A+VLAPTRELA QI + G + VR+ + G+ + + TP
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTP 172
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 59.7 bits (138), Expect = 6e-10
Identities = 24/62 (38%), Positives = 41/62 (66%)
Frame = +3
Query: 465 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 644
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 645 IK 650
+K
Sbjct: 131 LK 132
Score = 30.3 bits (65), Expect = 0.39
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 689 ALVLAPTRELAQQIQQVAAXFGPTSYVRNTCVFWGVXXXXXXXXXXXXXXIXIXTP 856
AL+L+P RELA Q +V F + +R+ + GV I + TP
Sbjct: 142 ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATP 197
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 58.4 bits (135), Expect = 1e-09
Identities = 27/82 (32%), Positives = 51/82 (62%)
Frame = +3
Query: 393 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 572
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 573 KNLVGVAQTGSGKTLAYILPAI 638
++++G A+TGSGKTLA+++P I
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI 148
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.6 bits (133), Expect = 2e-09
Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Frame = +3
Query: 435 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 614
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 615 LAYILPAIVHIK*PNRL----FGXVMVRLLWSWRLPES*HNKFSKLLXILDPHLMFV 773
AY++P + + ++ G + L+ + L + +N KL H+ F+
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFI 122
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 56.8 bits (131), Expect = 4e-09
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = +3
Query: 465 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 632
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP 58
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 689 ALVLAPTRELAQQIQQV 739
AL++APTRELA QI V
Sbjct: 75 ALIVAPTRELATQIFNV 91
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 51.6 bits (118), Expect = 1e-07
Identities = 20/58 (34%), Positives = 39/58 (67%)
Frame = +3
Query: 465 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 638
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSL 103
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 692 LVLAPTRELAQQIQQVAAXFG 754
L+L PTRELA Q QV G
Sbjct: 116 LILVPTRELALQTSQVCKTLG 136
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 49.2 bits (112), Expect = 8e-07
Identities = 26/83 (31%), Positives = 43/83 (51%)
Frame = +3
Query: 399 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 578
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 579 LVGVAQTGSGKTLAYILPAIVHI 647
++G A+TGSGKTLA+I+P I ++
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENL 101
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 677 DGPIALVLAPTRELAQQIQQVAAXFG 754
DG ALV++PTRELA Q + G
Sbjct: 110 DGLGALVISPTRELAIQTFETLVKIG 135
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 46.0 bits (104), Expect = 7e-06
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Frame = +3
Query: 318 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 491
D++ L N F + P P++ ++ +++ K + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEG 55
Query: 492 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 638
+ + +K E T IQ P S ++L+ A TGSGKT+AY+ P +
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPIL 105
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 44.8 bits (101), Expect = 2e-05
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +3
Query: 516 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 644
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEH 183
Score = 30.3 bits (65), Expect = 0.39
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 689 ALVLAPTRELAQQIQQVAAXFGPTSYVRNTCVFWGVXXXXXXXXXXXXXXIXIXTP 856
ALV+APTRELA QI Q P+ +R + G+ + + TP
Sbjct: 195 ALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATP 250
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 44.8 bits (101), Expect = 2e-05
Identities = 19/66 (28%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = +3
Query: 456 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYIL 629
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 630 PAIVHI 647
+ +
Sbjct: 173 TMLSRV 178
Score = 29.9 bits (64), Expect = 0.52
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 683 PIALVLAPTRELAQQIQQVAAXFGPTSYVR 772
P A+ LAP+RELA+QI V G + V+
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 44.0 bits (99), Expect = 3e-05
Identities = 22/75 (29%), Positives = 41/75 (54%)
Frame = +3
Query: 399 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 578
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 579 LVGVAQTGSGKTLAY 623
++ AQ+G+GKT +
Sbjct: 61 VIAQAQSGTGKTATF 75
Score = 31.1 bits (67), Expect = 0.23
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 689 ALVLAPTRELAQQIQQVAAXFGPTSYVR-NTCV 784
AL+L+PTRELA QIQ V G V+ + C+
Sbjct: 92 ALILSPTRELAVQIQNVVLALGDHMNVQCHACI 124
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 43.6 bits (98), Expect = 4e-05
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 465 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 644
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 645 -IK*PNRLFGXVM 680
K P+ +F ++
Sbjct: 69 WSKDPSGIFALIL 81
Score = 31.5 bits (68), Expect = 0.17
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 680 GPIALVLAPTRELAQQIQQVAAXFGPTSYVRNTCVFWGVXXXXXXXXXXXXXXIXIXTP 856
G AL+L PTRELA QI + A G +++ + G+ + + TP
Sbjct: 75 GIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATP 133
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 35.9 bits (79), Expect = 0.008
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 689 ALVLAPTRELAQQIQQVAAXFGPTSYVR-NTCV 784
AL+LAPTRELAQQIQ+V G V + C+
Sbjct: 90 ALILAPTRELAQQIQKVVVALGDLMNVECHACI 122
Score = 34.7 bits (76), Expect = 0.018
Identities = 15/64 (23%), Positives = 34/64 (53%)
Frame = +3
Query: 456 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 635
I F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 636 IVHI 647
+ I
Sbjct: 78 LQKI 81
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 35.5 bits (78), Expect = 0.011
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 432 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSG 608
S ++ P + E A+ + + G+++ TP+Q + + + +N V A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 609 KTLAYILPA 635
KTLA++L A
Sbjct: 89 KTLAFLLVA 97
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 35.5 bits (78), Expect = 0.011
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 513 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAI 638
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP +
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIV 200
Score = 31.1 bits (67), Expect = 0.23
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 671 RXDGPIALVLAPTRELAQQIQQVA 742
R G A+++APTREL QQI VA
Sbjct: 213 RTSGIYAVIMAPTRELCQQIYNVA 236
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.7 bits (66), Expect = 0.30
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 576 NLVGVAQTGSGKTLAYILPAIVHIK 650
NL+ V TG GK+L++++PA++ K
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKK 1232
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.7 bits (66), Expect = 0.30
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 576 NLVGVAQTGSGKTLAYILPAIVHIK 650
NL+ V TG GK+L++++PA++ K
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKK 1232
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.3 bits (65), Expect = 0.39
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 564 MSGKNLVGVAQTGSGKTLAYILPAIV 641
+SGK++ + TG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.69
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 555 PIAMSGKNLVGVAQTGSGKTLAYILPAI 638
P+ G ++ A TGSGKTL+Y++P +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIV 195
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.7 bits (61), Expect = 1.2
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -1
Query: 317 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 144
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 143 HDYFSDLVEDVYLNYGFFLTQG 78
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 653 TKPPIRRXDGPIA-LVLAPTRELAQQIQQVAAXFGPTSYVRNTCVFWG 793
T I DG ++ LVL TRELA QI+ A F T VF+G
Sbjct: 109 TLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYG 156
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 35 SLRFCFHRAAVVKVDPASERIHSLNKHLQLNPKNNHV 145
+L+ C +R ++ DP S + + HL L+ KN+ V
Sbjct: 260 TLKLCLYRR-IIGFDPPSWKTQQMMSHLNLSRKNSEV 295
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 527 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 402
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 4.9
Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Frame = -1
Query: 563 SYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISILFDFIW* 384
+Y L +G H L ++ + F K ++ + + SY++ + + +W
Sbjct: 686 AYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVLILCPVHPIVWK 745
Query: 383 SFENCRMWIIKVFVERLE*NRIPIWAS----HVLPSREFFFPTKASRSSKSIATVAKPRR 216
+ F L+ NR+ I AS H+ ++ F + ++ + R
Sbjct: 746 G--RIEKVDVPDFSVDLKTNRVRIIASNKREHLQAAKSVFQSISGDLVTLAVECRSSITR 803
Query: 215 IIAEFVASSKFGTTVSTAII 156
+ EF+ SK +S+ ++
Sbjct: 804 VYKEFIRLSKLCMRISSTVV 823
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 387 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 518
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 387 PYEVEEYRNKHEVTVS 434
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 691 SNRTITSPNRRFGYLMCTIAGKM*ANVLPE 602
S++T T + + CTIAG A+V+PE
Sbjct: 517 SDKTGTLTRNQMEFRQCTIAGVAYADVIPE 546
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 362 WIIKVFVERLE*NRIPIWASHVLPSREF 279
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,453,633
Number of Sequences: 5004
Number of extensions: 71521
Number of successful extensions: 229
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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