Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P13
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu...    39   8e-04
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    29   0.68 
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    28   2.1  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   2.7  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   6.3  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    26   8.4  

>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 137

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +2

Query: 380 ILPKEEWTKYEEDSLYLTPIVXQVXKXRLEK 472
           ILPK EWTK EED  YL P++ +V   R E+
Sbjct: 82  ILPKSEWTKPEEDYHYLRPVLAEVIAERKER 112



 Score = 33.5 bits (73), Expect = 0.042
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 222 NLSGFNKYGLLRDD-CLHETPDVTEALRRLP 311
           +LSG+ KYGL  DD  L E  D  +AL RLP
Sbjct: 29  HLSGYRKYGLRYDDLMLEENDDTQKALSRLP 59


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 167 HHGSCSKSHFIDSQIYDFNVILTQTTRNSQYLFSTSSKIAKNLKDS 30
           HHGS SK H I  Q+  ++++LT T     Y F       K+++D+
Sbjct: 474 HHGS-SKKHKIAEQLMSYDIVLT-TYNVIAYEFKNKMAYDKSIEDN 517


>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 407 ILSTLL*VGLFFCMESCMARTIRKFLSSTNMGWKSAECFSYIRS 276
           IL + + V  F+C ++C+     +F+ + N   K  E F+ ++S
Sbjct: 20  ILGSSIPVLGFYCADTCIRNAFMEFMETRNSKSKYVEAFNTVQS 63


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -3

Query: 227 KIVGPFAEAVTSVNSRGSESHHGSCSKSH-FIDSQIYDFNVILTQTTRNSQYLFSTSSKI 51
           K + P ++ +T  N + + SH GS +KSH F    ++D N  ++    N+    +TSS++
Sbjct: 320 KELSPHSQ-ITLSNVKNNHSHVGSQTKSHSFATPSVFDNNKPVSSDNHNNT---TTSSQV 375


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -2

Query: 345 NTEVSLVNK--HGMEVCGVLQLHQEFHASNHPV 253
           +T+ SL  K  HG  VC    L+   H  N P+
Sbjct: 424 STKTSLWRKDRHGQTVCNACGLYARLHGHNRPI 456


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 300 RRLPSHVC*REKLPYCTCHTALHAKKQSYLKKSGQ 404
           + LP+     ++ PYC C      K+    K+SGQ
Sbjct: 17  KNLPNKALVGKQSPYCVCRVGEVVKRTQTDKRSGQ 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,393
Number of Sequences: 5004
Number of extensions: 43424
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)