Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P13
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    29   3.8  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   8.8  
01_01_0604 - 4493868-4494028,4494538-4494746,4495860-4496003,449...    28   8.8  

>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 432  VKYRESSSYFVHSSLGRIVFLHGELYGTYNT--EVSLVNKHGMEVCGVLQLHQEF 274
            +KY   + YF  + LGRI   +   +GT +T  E        +E+C +  L +EF
Sbjct: 1005 IKYDRKTGYFQVTDLGRIASYYYISHGTISTYNEYLKPTMGDIELCRLFSLSEEF 1059


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 25/106 (23%), Positives = 28/106 (26%), Gaps = 4/106 (3%)
 Frame = +3

Query: 588 PXPGIPLXXGXWXPXXXXTXXXXGX----PPPKXXXKNXFFGXXXXPXAXXGXPXXPXXX 755
           P P +PL  G   P    +          PPP    K         P      P  P   
Sbjct: 284 PSPSLPLPPGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKG 343

Query: 756 XXPXPXXXXXXXPXPGGGXGXXXPAXXNPPPPRXXGXXFXXPXXXP 893
             P P       P P        P   +PPPP   G     P   P
Sbjct: 344 PPPPPPAKGPPPPPP--------PKGPSPPPPPPPGGKKGGPPPPP 381


>01_01_0604 -
           4493868-4494028,4494538-4494746,4495860-4496003,
           4496298-4496539
          Length = 251

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 336 VSLVNKHGMEVCGVLQLHQEFHASNHPVTNHIY*IPKDCRP 214
           V  + K G+  CG+LQ   +  A+ +P T  +  I  DC P
Sbjct: 122 VVFLYKDGIPECGLLQTCLDELATRYPATKFVKIISTDCIP 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,662,179
Number of Sequences: 37544
Number of extensions: 297016
Number of successful extensions: 753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)