Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_P13
(901 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006684-9|AAF39958.1| 130|Caenorhabditis elegans Hypothetical ... 39 0.006
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.37
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.37
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.37
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 2.6
U39472-10|AAZ82853.1| 354|Caenorhabditis elegans Serpentine rec... 29 6.0
>AC006684-9|AAF39958.1| 130|Caenorhabditis elegans Hypothetical
protein T02H6.11 protein.
Length = 130
Score = 38.7 bits (86), Expect = 0.006
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Frame = +3
Query: 195 SDSLSKWAY-NLSGFNKYGLLRDDCLHE-TPDVTEALRRL---PSHVC*REKLPYCTCHT 359
+ +L K+A+ NL G +YGL D E P+VTEALRRL HV + K+ HT
Sbjct: 19 ASTLRKFAWSNLWGGREYGLQFHDTYFEPAPEVTEALRRLNLQEPHVFDQRKIRLSRAHT 78
Query: 360 -ALHAKK 377
ALH +K
Sbjct: 79 LALHGEK 85
Score = 31.5 bits (68), Expect = 0.85
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 383 LPKEEWTKYEEDSLYLTPIVXQV 451
LPK EWT+++++S YL P + ++
Sbjct: 86 LPKAEWTQWDQESWYLKPYLDEI 108
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.7 bits (71), Expect = 0.37
Identities = 21/67 (31%), Positives = 21/67 (31%)
Frame = +3
Query: 663 PPPKXXXKNXFFGXXXXPXAXXGXPXXPXXXXXPXPXXXXXXXPXPGGGXGXXXPAXXNP 842
PPPK G P A P P P P P P GG A P
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPP--PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 298
Query: 843 PPPRXXG 863
PPP G
Sbjct: 299 PPPPPRG 305
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +3
Query: 729 GXPXXPXXXXXPXPXXXXXXXPXPGGGXGXXXPAXXNPPPPR 854
G P P P P G G PA +PPPPR
Sbjct: 227 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPR 268
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.7 bits (71), Expect = 0.37
Identities = 21/67 (31%), Positives = 21/67 (31%)
Frame = +3
Query: 663 PPPKXXXKNXFFGXXXXPXAXXGXPXXPXXXXXPXPXXXXXXXPXPGGGXGXXXPAXXNP 842
PPPK G P A P P P P P P GG A P
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPP--PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 319
Query: 843 PPPRXXG 863
PPP G
Sbjct: 320 PPPPPRG 326
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +3
Query: 729 GXPXXPXXXXXPXPXXXXXXXPXPGGGXGXXXPAXXNPPPPR 854
G P P P P G G PA +PPPPR
Sbjct: 248 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPR 289
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.37
Identities = 21/67 (31%), Positives = 21/67 (31%)
Frame = +3
Query: 663 PPPKXXXKNXFFGXXXXPXAXXGXPXXPXXXXXPXPXXXXXXXPXPGGGXGXXXPAXXNP 842
PPPK G P A P P P P P P GG A P
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPP--PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 304
Query: 843 PPPRXXG 863
PPP G
Sbjct: 305 PPPPPRG 311
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +3
Query: 729 GXPXXPXXXXXPXPXXXXXXXPXPGGGXGXXXPAXXNPPPPR 854
G P P P P G G PA +PPPPR
Sbjct: 233 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPR 274
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/65 (29%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Frame = +3
Query: 663 PPPKXXXKNXFFGXXXXPXAXXGXPXXPXXXXXPXPXXXXXXXPXPG--GGXGXXXPAXX 836
PP + K FF P P P P P P P GG P
Sbjct: 53 PPGQSIPKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFG 112
Query: 837 NPPPP 851
PPPP
Sbjct: 113 APPPP 117
>U39472-10|AAZ82853.1| 354|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 36 protein.
Length = 354
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 374 FCMESCMARTIRKFLSSTNMGWKSAECFSY--IRSFMQAIIP*QTIFIESRKIVGPFAEA 201
F M + R+I K +S + +K +ECFSY I F++ ++ + K++ F
Sbjct: 85 FTMNWSLYRSIEKSNNSCGIMFKGSECFSYYVIGIFVRVLLLTSQFAVTIEKLIVTFLPN 144
Query: 200 VTSVNS 183
+NS
Sbjct: 145 SDLINS 150
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,719,637
Number of Sequences: 27780
Number of extensions: 262023
Number of successful extensions: 856
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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