Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P12
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    62   9e-11
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    26   6.9  

>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 62.5 bits (145), Expect = 9e-11
 Identities = 30/71 (42%), Positives = 47/71 (66%)
 Frame = +2

Query: 317 MTSSNTLQKAIDLVTKATEEDXNKNYEXALRLYEHGVEYFLHAVKYEAQGERAKESIRAX 496
           M++ + L KAI LV  A + D  + Y  A + Y+  ++YF+ A+KYE + E++KE IR+ 
Sbjct: 1   MSNPDCLSKAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYE-KNEKSKEIIRSK 59

Query: 497 CLQYLDRAXKL 529
            ++YLDRA KL
Sbjct: 60  VIEYLDRAEKL 70


>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 160 FFSSSRSFLQKPRPPKKPPHY 98
           +F S  +FL K  PPKK  HY
Sbjct: 97  YFGSEETFLWKYFPPKKYVHY 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,410
Number of Sequences: 5004
Number of extensions: 36177
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)