Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P12
         (962 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0268 - 2214923-2215048,2215131-2215286,2215371-2215469,221...    51   2e-06
01_01_0270 - 2225250-2225263,2225549-2225732,2225817-2225972,222...    50   3e-06
02_01_0450 + 3234378-3234834,3235118-3235223,3235722-3235920,323...    45   1e-04
08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004           29   7.3  
08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144...    29   7.3  
04_01_0600 + 7907142-7908047,7908218-7908316                           29   7.3  
05_03_0414 + 13650483-13651388,13651559-13651657                       28   9.6  

>01_01_0268 -
           2214923-2215048,2215131-2215286,2215371-2215469,
           2215557-2215631,2215732-2215800,2216515-2216713,
           2220162-2220267,2221117-2221588
          Length = 433

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 27/71 (38%), Positives = 42/71 (59%)
 Frame = +2

Query: 326 SNTLQKAIDLVTKATEEDXNKNYEXALRLYEHGVEYFLHAVKYEAQGERAKESIRAXCLQ 505
           SN  ++AI+ V +A +ED   NY  A  LY + +EYF   +KYE +  + KE+I A   +
Sbjct: 3   SNFKEQAIEYVKQAVQEDNAGNYVKAFPLYMNALEYFKTHLKYE-KNPKIKEAITAKFTE 61

Query: 506 YLDRAXKLNGI 538
           YL RA ++  +
Sbjct: 62  YLRRAEEIRAV 72


>01_01_0270 -
           2225250-2225263,2225549-2225732,2225817-2225972,
           2226276-2226374,2226489-2226563,2226682-2226750,
           2226917-2227115,2227492-2227597,2228118-2228526
          Length = 436

 Score = 50.0 bits (114), Expect = 3e-06
 Identities = 26/71 (36%), Positives = 42/71 (59%)
 Frame = +2

Query: 326 SNTLQKAIDLVTKATEEDXNKNYEXALRLYEHGVEYFLHAVKYEAQGERAKESIRAXCLQ 505
           SN  ++AI+ V +A +ED   NY  A  LY + +EYF   +KYE +  + K++I A   +
Sbjct: 3   SNFKEQAIEYVKQAVQEDNGGNYVKAFPLYMNALEYFKTHLKYE-KDPKIKDAIAAKFTE 61

Query: 506 YLDRAXKLNGI 538
           YL RA ++  +
Sbjct: 62  YLRRAEEIRAV 72


>02_01_0450 +
           3234378-3234834,3235118-3235223,3235722-3235920,
           3236119-3236187,3236299-3236373,3236484-3236582,
           3236694-3236864,3237394-3237519
          Length = 433

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 24/64 (37%), Positives = 37/64 (57%)
 Frame = +2

Query: 338 QKAIDLVTKATEEDXNKNYEXALRLYEHGVEYFLHAVKYEAQGERAKESIRAXCLQYLDR 517
           ++ I LV KA EED   N+  AL LY H ++Y    +KYE +  R +++I A    Y+ R
Sbjct: 7   EQGILLVRKAVEEDDAGNHARALPLYVHALDYLAAHLKYE-RNPRVRDAITAKLAGYIAR 65

Query: 518 AXKL 529
           A ++
Sbjct: 66  AEEI 69


>08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004
          Length = 681

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
 Frame = -2

Query: 178 YQLTFWFFSSSRSFLQK-------PRPPKKP 107
           +QLT W+F SS SF QK       P PP  P
Sbjct: 253 HQLTSWYFKSSSSFEQKLAAKVASPPPPSSP 283


>08_01_0170 -
           1440908-1441072,1441539-1441581,1442155-1442619,
           1442714-1444149
          Length = 702

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
 Frame = -2

Query: 178 YQLTFWFFSSSRSFLQK-------PRPPKKP 107
           +QLT W+F SS SF QK       P PP  P
Sbjct: 256 HQLTSWYFKSSSSFEQKLAAKVASPPPPSSP 286


>04_01_0600 + 7907142-7908047,7908218-7908316
          Length = 334

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 26/98 (26%), Positives = 41/98 (41%)
 Frame = +2

Query: 227 GFLIIIAANNCVKDTAEQFFAP*LW*I*XTMTSSNTLQKAIDLVTKATEEDXNKNYEXAL 406
           G+L+  +  + + D  ++      W +      +  L K +DL TK       + YE   
Sbjct: 123 GWLMSDSREDKIDDFVQEMEMTRFWPLERREVIAEVLLKNVDLKTKY---HCPEKYENEE 179

Query: 407 RLYEHGVEYFLHAVKYEAQGERAKESIRAXCLQYLDRA 520
           RL +H  +     V     G RAK S+R  C+Q  D A
Sbjct: 180 RLADHKAQCSFRPVTCPNDGCRAKVSVR--CMQDHDSA 215


>05_03_0414 + 13650483-13651388,13651559-13651657
          Length = 334

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 26/98 (26%), Positives = 41/98 (41%)
 Frame = +2

Query: 227 GFLIIIAANNCVKDTAEQFFAP*LW*I*XTMTSSNTLQKAIDLVTKATEEDXNKNYEXAL 406
           G+L+  +  + + D  ++      W +      +  L K +DL TK       + YE   
Sbjct: 123 GWLMSDSREDKIDDFVQEMEMTRFWPLERREIIAEVLLKNVDLKTKY---HCPEKYENEE 179

Query: 407 RLYEHGVEYFLHAVKYEAQGERAKESIRAXCLQYLDRA 520
           RL +H  +     V     G RAK S+R  C+Q  D A
Sbjct: 180 RLADHKAQCSFRPVTCPNDGCRAKVSVR--CMQDHDSA 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,246,442
Number of Sequences: 37544
Number of extensions: 255212
Number of successful extensions: 566
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)