Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P10
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   6.5  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    26   8.6  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    26   8.6  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   8.6  

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +3

Query: 516  LRQRMSEYEAL---TQKIPRLVKRQSSTFC*RW 605
            LR+R++E+ AL   TQ IP L  R+S  +  +W
Sbjct: 2166 LRRRLNEHYALQKITQLIPSLTIRESREYLQKW 2198


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/75 (18%), Positives = 32/75 (42%)
 Frame = +2

Query: 248 LKREWKILRDSMRQALKRMKRGDTTKAGVPSKKWQYQSRMAFVLPHMTMRRNQRHAIRED 427
           L+++ K + +   Q        D+ +    +  WQ      +V+     R  QR  IRE 
Sbjct: 609 LEQQSKFMTEKRNQQKFAPIDSDSVEQFAQTIDWQQTPLGIYVVTQRQTREEQRKLIRES 668

Query: 428 IKMDETEVQSDQEQE 472
           ++ D+   +  ++++
Sbjct: 669 VQQDQEHKEQMRQKK 683


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/79 (20%), Positives = 36/79 (45%)
 Frame = +2

Query: 272 RDSMRQALKRMKRGDTTKAGVPSKKWQYQSRMAFVLPHMTMRRNQRHAIREDIKMDETEV 451
           ++ ++   K  KR    K+ VP+KK + + + +   P   +       + +D ++++   
Sbjct: 149 KEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRS---PSPKIE-----ILEDDEEIEDVAS 200

Query: 452 QSDQEQEIWDPGNADQDSL 508
             D+E++ W     D D L
Sbjct: 201 DKDEEEKPWSGDEEDDDEL 219


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 421 RRYQNGRDRGSIRPGARDLGPR*RRSRFA 507
           R  ++GR   S RP +R+ G R R  RF+
Sbjct: 36  RESKHGRHDRSERPSSREAGDRSRHERFS 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,613
Number of Sequences: 5004
Number of extensions: 66471
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)