Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P10
         (922 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   5.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   9.0  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +1

Query: 301 DEKG*HNKSWCSFQEVAVPE*DGVCPASHDYEEEPEARNPRRYQNGRDRG 450
           DE G  ++ W ++QE   P      PA +  +     R P ++ N    G
Sbjct: 387 DEIGMEDR-WFTYQETVDPAGCNAGPAKYYLKSRDPERTPYQWDNSTSAG 435


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 507 WIILRQRMSEYEALTQKI 560
           W++ ++R  EYE L +K+
Sbjct: 43  WLVQQEREQEYEKLKRKM 60


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 416 IREDIKMDETEVQSDQEQEIWDPGNADQDSLDYSSPA 526
           I +D+K ++  V S  ++EI  P N  ++++D ++ A
Sbjct: 350 ILDDVKCEDERVISIPDKEITVPSN--EETIDINNGA 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,828
Number of Sequences: 438
Number of extensions: 4867
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)