Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P09
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0621 - 5426210-5427787                                           29   3.9  
05_04_0170 + 18698824-18699097,18700212-18701254                       29   5.2  
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704...    28   9.0  
01_06_1584 - 38441654-38442847                                         28   9.0  

>08_01_0621 - 5426210-5427787
          Length = 525

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 625 MFQVRGRCGRFSCXMNRPPPGKXVXXWGASSGSPLTDXL 741
           M +  GR  RF C M  PPP +      AS+G    D L
Sbjct: 2   MSRFSGRLNRFVCGMAAPPPEEEDDDAAASAGGEAEDAL 40


>05_04_0170 + 18698824-18699097,18700212-18701254
          Length = 438

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 109 VGIHYFLFHWMGLYMSQIQILQKS*GFPIV 20
           +G+++FL   MG+  S +QILQ S   P+V
Sbjct: 36  LGVNFFLKDGMGVAASSLQILQASANLPMV 65


>12_02_0118 -
           13869237-13869307,13869375-13869465,13870321-13870440,
           13870668-13870795,13871159-13871270,13871719-13871817,
           13871918-13871992,13872099-13872320,13873177-13874034
          Length = 591

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = -3

Query: 827 GYPPIXXXTRIPPFGGXKPVXPNPXXXGARXSVRGEPEEAPXNXTXF 687
           G PP    ++ PPFGG       P   G   S     + AP     F
Sbjct: 152 GGPPAAVASQPPPFGGPPVAAAQPPPFGRPPSAAAAGQSAPLGGALF 198


>01_06_1584 - 38441654-38442847
          Length = 397

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 185 ITSVAVIIIRIWLFIGKIIRLS 120
           +T + +I+I IW  +G+I+RLS
Sbjct: 56  VTRIVLILITIWWGVGEIVRLS 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,149,501
Number of Sequences: 37544
Number of extensions: 342614
Number of successful extensions: 852
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)