Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P08
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein...   213   3e-56
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    29   1.2  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    26   6.3  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   6.3  

>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score =  213 bits (520), Expect = 3e-56
 Identities = 101/171 (59%), Positives = 128/171 (74%), Gaps = 2/171 (1%)
 Frame = +2

Query: 107 IFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRNKLEKDIDEVLQTHTVFTNVSK 286
           I  P  QIRLTNV++V+ KKGGKRFE+ACYKNKV  WRNK+E D+DEVLQ H VF NVSK
Sbjct: 3   ISQPVGQIRLTNVSVVKYKKGGKRFEVACYKNKVTEWRNKIETDLDEVLQIHNVFNNVSK 62

Query: 287 GQVAKKEDLIKIFAKEDQTEICKEILEKGELQVSDKERHSQIDSLFKDIATTVADKCVNP 466
           G VA ++DL K F  +D  +I  EIL+KG+ QV +KERH Q+ S ++DI + V   C++P
Sbjct: 63  GHVASRQDLKKAFGTDDIDKIILEILQKGDFQVGEKERHHQMSSTYRDIVSHVTAMCMDP 122

Query: 467 ETKRPYPVSIIEKAIKDVHFSVNVNKSAKQQALDVIQIL--KNEIPIERAQ 613
            +KRPYP SIIEKA+ D  FSV+ +K+AK QAL+ I+ L  KNEIPI RA+
Sbjct: 123 NSKRPYPASIIEKALSDCGFSVSTSKTAKSQALEAIKKLQEKNEIPIVRAR 173


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 443 VADKCVNPETKRPYPVSIIEKAIKDVHFSVNVNKSAKQQALDVI 574
           + D CV  +  RP+ V I  +AI D  +    + S  ++  D++
Sbjct: 432 IIDLCVRVKALRPFSVDIFSQAILDPSYVSTTDCSVSEKRTDIL 475


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 167 GGKRFEIACYKNKVLS---WRNKLEKDIDEVLQTHTVF 271
           G + F I+ Y N +++   W+  +EK  D + + H VF
Sbjct: 775 GARGFSISLYLNTLIARDQWKQHIEKQQDIIRKRHLVF 812


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 461 NPETKRPYPVSIIEKAIKDVHFSVNVNKSAKQ 556
           N  + R   ++ IEKAI+ +  S N+NK+ ++
Sbjct: 162 NSSSNRIEGLADIEKAIRQIEISQNINKAERR 193


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 20  HYRESLRFKLLERI*SRSNRITKLKTMS--KIFTPTNQIRL 136
           HY +++  KLL +  SR N ITKL+  S   ++ PT+   L
Sbjct: 400 HYAKAM--KLLSKYNSRENMITKLRESSLYLLYAPTDAFLL 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,838
Number of Sequences: 5004
Number of extensions: 54818
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)