Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P08
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0052 + 361505-361969,362270-362348,362816-362880,363069-36...   204   7e-53
11_01_0737 + 6211149-6211466,6212022-6212183,6212290-6213101,621...    30   2.9  

>08_01_0052 +
           361505-361969,362270-362348,362816-362880,363069-363236,
           363731-364171
          Length = 405

 Score =  204 bits (498), Expect = 7e-53
 Identities = 92/148 (62%), Positives = 122/148 (82%)
 Frame = +2

Query: 116 PTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRNKLEKDIDEVLQTHTVFTNVSKGQV 295
           P  Q RLTNVA+VRL+K G+RFEIAC+ NKVLSWR ++EKDIDEVLQ+HTV++NVSKG +
Sbjct: 8   PVGQKRLTNVAVVRLRKHGQRFEIACFPNKVLSWRTRVEKDIDEVLQSHTVYSNVSKGVL 67

Query: 296 AKKEDLIKIFAKEDQTEICKEILEKGELQVSDKERHSQIDSLFKDIATTVADKCVNPETK 475
           AK +DL+K F+ +D T IC EIL+KGELQVS KER +Q+ S F +IAT V DK +NPET+
Sbjct: 68  AKSKDLLKAFSTDDHTAICLEILDKGELQVSGKEREAQLSSQFHEIATIVMDKTINPETR 127

Query: 476 RPYPVSIIEKAIKDVHFSVNVNKSAKQQ 559
           RPY +++IE+ + DVHF+V+ N ++K+Q
Sbjct: 128 RPYTITMIERLMHDVHFAVDPNLTSKEQ 155


>11_01_0737 +
           6211149-6211466,6212022-6212183,6212290-6213101,
           6213188-6213395,6214157-6214364,6214752-6215206,
           6215585-6216011,6216391-6216471,6216571-6216761,
           6216855-6216998
          Length = 1001

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 200 NKVLSWRNKLEKDIDEVLQTHTVFTNVSKGQVAKKEDLIKIFAKED 337
           N + S  +KL   +D+VL T       + G   KK+DL+ +   ED
Sbjct: 661 NSIASSLSKLTMSVDDVLCTSRSNDTENNGSSGKKDDLLLLVTTED 706


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,858,885
Number of Sequences: 37544
Number of extensions: 306515
Number of successful extensions: 687
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)