Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P08
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20862-1|AAK29863.2|  253|Caenorhabditis elegans Hypothetical pr...   232   2e-61
U14634-2|AAA21560.2|  423|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical ...    30   2.0  
U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome regu...    30   2.6  
U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna bind...    30   2.6  
Z80219-7|CAN86594.1|  804|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z80219-6|CAI70409.1|  734|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z80219-5|CAB02302.2|  784|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z80219-4|CAE17938.1|  745|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z80219-1|CAB02301.2|  727|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z75546-12|CAN86896.1|  804|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z75546-11|CAI70402.1|  734|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z75546-10|CAA99896.2|  784|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z75546-9|CAE17895.1|  745|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC024796-10|AAK29896.1|  623|Caenorhabditis elegans Hypothetical...    29   4.5  
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    29   6.0  

>U20862-1|AAK29863.2|  253|Caenorhabditis elegans Hypothetical
           protein W06E11.4 protein.
          Length = 253

 Score =  232 bits (568), Expect = 2e-61
 Identities = 112/173 (64%), Positives = 140/173 (80%), Gaps = 1/173 (0%)
 Frame = +2

Query: 98  MSK-IFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRNKLEKDIDEVLQTHTVFT 274
           MSK I TPTNQ  LTNVA+VR+KK GKRFEIACYKNKV++WRNK EKDIDEVLQTHTVF+
Sbjct: 1   MSKNIKTPTNQKVLTNVAVVRMKKTGKRFEIACYKNKVVNWRNKSEKDIDEVLQTHTVFS 60

Query: 275 NVSKGQVAKKEDLIKIFAKEDQTEICKEILEKGELQVSDKERHSQIDSLFKDIATTVADK 454
           NVSKGQ++KKE+LI  F  EDQ EICK IL+KG+LQVS+KER +  D   K+++  +A  
Sbjct: 61  NVSKGQLSKKEELIAAFGIEDQLEICKIILDKGDLQVSEKERQAASDQSLKEVSQLIASM 120

Query: 455 CVNPETKRPYPVSIIEKAIKDVHFSVNVNKSAKQQALDVIQILKNEIPIERAQ 613
            VNPETKRP P S+I+KA++++HFS+  N+S+KQQALD I  L+  + IERA+
Sbjct: 121 VVNPETKRPVPPSVIDKALQEMHFSLKPNRSSKQQALDAIPKLRETLKIERAK 173


>U14634-2|AAA21560.2|  423|Caenorhabditis elegans Hypothetical
           protein T15B12.2 protein.
          Length = 423

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 35/162 (21%), Positives = 66/162 (40%)
 Frame = +2

Query: 2   TVFIXXHYRESLRFKLLERI*SRSNRITKLKTMSKIFTPTNQIRLTNVAIVRLKKGGKRF 181
           T+    H    L +KL + I S  + I       K   P +  ++ N     L+  GK+ 
Sbjct: 254 TILDLFHNERGLSWKLDKIIPSGIDNIIVYLRGLKFEDPVDYRQIEN----ELRTAGKKM 309

Query: 182 EIACYKNKVLSWRNKLEKDIDEVLQTHTVFTNVSKGQVAKKEDLIKIFAKEDQTEICKEI 361
             +   ++ + W  KLE+ + E  +   V T   KG+     + +K  AK D+ ++  + 
Sbjct: 310 APSDSSDETMDWTGKLEQLLKEANKNKAVGT--PKGEETLLYERLK--AKRDR-DMTTDA 364

Query: 362 LEKGELQVSDKERHSQIDSLFKDIATTVADKCVNPETKRPYP 487
           ++  E++ +        + +F D   T     V+ E   P P
Sbjct: 365 VKTVEMRATINRDVDASEGMFNDKGLTTRTTLVSVELPPPPP 406


>AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical
           protein T11F1.8 protein.
          Length = 888

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 564 KACCFALLFTLTEKWTSLIAFSIIETGYGRFVSGLTHL 451
           K C F  L TL E  TS++   +++   GR++  L H+
Sbjct: 336 KLCNFQTLITLPENCTSIVGDVVVDANDGRYLYKLFHV 373


>U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 5 protein.
          Length = 490

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
 Frame = +2

Query: 29  ESLRFKLLERI*SRSNRITKLKTMSKIFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKV 208
           E L+ KL+E +        +  T  KI+    + RLT++ + +L++ GK  E A    ++
Sbjct: 140 EDLKMKLIETL--------RTVTAGKIYVEVERARLTSMVVKKLEREGKLDEAATMLLEL 191

Query: 209 -------LSWRNKLEKDIDEVLQTHTVFTNVSKGQVAKKEDLIKIFAKEDQTEI 349
                  +  R K++  +++ ++   V  +  +  +  K+  IK F K D+ E+
Sbjct: 192 QVETYGSMEMREKVQYLLEQ-MRYSLVRNDFVRATIISKKINIKFFNKSDEDEV 244


>U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna binding
           factor protein 2 protein.
          Length = 632

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/89 (22%), Positives = 37/89 (41%)
 Frame = +2

Query: 158 LKKGGKRFEIACYKNKVLSWRNKLEKDIDEVLQTHTVFTNVSKGQVAKKEDLIKIFAKED 337
           LKK   R     ++    S   K+ + +  +  TH ++   S G  + K D     ++ D
Sbjct: 535 LKKLHSRVTKERHRLSRFSSGKKMIETLANLRSTHPIYELQSSGHDSFKTDYFSTASEHD 594

Query: 338 QTEICKEILEKGELQVSDKERHSQIDSLF 424
             E+ K  +E+G L +  +   S +   F
Sbjct: 595 GPELEKNGIEEGSLMLEPRSNKSSVSVKF 623


>Z80219-7|CAN86594.1|  804|Caenorhabditis elegans Hypothetical
           protein T01H8.1e protein.
          Length = 804

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 434 ATTVADKCVNPETKRPYPVSIIEKAIKDVHFSVNV--NKSAKQQALDVIQILKNEIPI 601
           A +V  KC    T+R Y V I++KA+ D    V++    S  Q  + +  + ++E  I
Sbjct: 458 AHSVVHKCQMKATRRKYAVKIVKKAVFDATEEVDILLRHSHHQFVVKLFDVYEDETAI 515


>Z80219-6|CAI70409.1|  734|Caenorhabditis elegans Hypothetical
           protein T01H8.1d protein.
          Length = 734

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 434 ATTVADKCVNPETKRPYPVSIIEKAIKDVHFSVNV--NKSAKQQALDVIQILKNEIPI 601
           A +V  KC    T+R Y V I++KA+ D    V++    S  Q  + +  + ++E  I
Sbjct: 445 AHSVVHKCQMKATRRKYAVKIVKKAVFDATEEVDILLRHSHHQFVVKLFDVYEDETAI 502


>Z80219-5|CAB02302.2|  784|Caenorhabditis elegans Hypothetical
           protein T01H8.1a protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 434 ATTVADKCVNPETKRPYPVSIIEKAIKDVHFSVNV--NKSAKQQALDVIQILKNEIPI 601
           A +V  KC    T+R Y V I++KA+ D    V++    S  Q  + +  + ++E  I
Sbjct: 464 AHSVVHKCQMKATRRKYAVKIVKKAVFDATEEVDILLRHSHHQFVVKLFDVYEDETAI 521


>Z80219-4|CAE17938.1|  745|Caenorhabditis elegans Hypothetical
           protein T01H8.1c protein.
          Length = 745

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 434 ATTVADKCVNPETKRPYPVSIIEKAIKDVHFSVNV--NKSAKQQALDVIQILKNEIPI 601
           A +V  KC    T+R Y V I++KA+ D    V++    S  Q  + +  + ++E  I
Sbjct: 425 AHSVVHKCQMKATRRKYAVKIVKKAVFDATEEVDILLRHSHHQFVVKLFDVYEDETAI 482


>Z80219-1|CAB02301.2|  727|Caenorhabditis elegans Hypothetical
           protein T01H8.1b protein.
          Length = 727

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 434 ATTVADKCVNPETKRPYPVSIIEKAIKDVHFSVNV--NKSAKQQALDVIQILKNEIPI 601
           A +V  KC    T+R Y V I++KA+ D    V++    S  Q  + +  + ++E  I
Sbjct: 407 AHSVVHKCQMKATRRKYAVKIVKKAVFDATEEVDILLRHSHHQFVVKLFDVYEDETAI 464


>Z75546-12|CAN86896.1|  804|Caenorhabditis elegans Hypothetical
           protein T01H8.1e protein.
          Length = 804

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 434 ATTVADKCVNPETKRPYPVSIIEKAIKDVHFSVNV--NKSAKQQALDVIQILKNEIPI 601
           A +V  KC    T+R Y V I++KA+ D    V++    S  Q  + +  + ++E  I
Sbjct: 458 AHSVVHKCQMKATRRKYAVKIVKKAVFDATEEVDILLRHSHHQFVVKLFDVYEDETAI 515


>Z75546-11|CAI70402.1|  734|Caenorhabditis elegans Hypothetical
           protein T01H8.1d protein.
          Length = 734

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 434 ATTVADKCVNPETKRPYPVSIIEKAIKDVHFSVNV--NKSAKQQALDVIQILKNEIPI 601
           A +V  KC    T+R Y V I++KA+ D    V++    S  Q  + +  + ++E  I
Sbjct: 445 AHSVVHKCQMKATRRKYAVKIVKKAVFDATEEVDILLRHSHHQFVVKLFDVYEDETAI 502


>Z75546-10|CAA99896.2|  784|Caenorhabditis elegans Hypothetical
           protein T01H8.1a protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 434 ATTVADKCVNPETKRPYPVSIIEKAIKDVHFSVNV--NKSAKQQALDVIQILKNEIPI 601
           A +V  KC    T+R Y V I++KA+ D    V++    S  Q  + +  + ++E  I
Sbjct: 464 AHSVVHKCQMKATRRKYAVKIVKKAVFDATEEVDILLRHSHHQFVVKLFDVYEDETAI 521


>Z75546-9|CAE17895.1|  745|Caenorhabditis elegans Hypothetical
           protein T01H8.1c protein.
          Length = 745

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 434 ATTVADKCVNPETKRPYPVSIIEKAIKDVHFSVNV--NKSAKQQALDVIQILKNEIPI 601
           A +V  KC    T+R Y V I++KA+ D    V++    S  Q  + +  + ++E  I
Sbjct: 425 AHSVVHKCQMKATRRKYAVKIVKKAVFDATEEVDILLRHSHHQFVVKLFDVYEDETAI 482


>AC024796-10|AAK29896.1|  623|Caenorhabditis elegans Hypothetical
           protein Y48G1C.7 protein.
          Length = 623

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 302 KEDLIKIFAKEDQTEICKEILEKGELQVSDK 394
           +ED++++ A+    E+ K ILEK  +QV+ K
Sbjct: 300 REDVLRLLARMTPAEVAKVILEKYGIQVNTK 330


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
 Frame = +2

Query: 335 DQTEICKEIL---EKGELQVSDKERHSQIDSLFKDIA-TTVADKCVNPETK-RPYPVSII 499
           D  E+  ++L    +GE +   KERH   + L+KDI    V DK +  E       +  I
Sbjct: 30  DPEELANQVLFDKPRGEKRWLGKERHKGKERLYKDIKDKNVMDKTIQLEANLSKNAIKKI 89

Query: 500 EKAIKD-VHFSV--NVNKSAKQQALDVIQIL 583
           E +  D   F+V  ++ K  + + +D + +L
Sbjct: 90  ESSTADGFQFNVAYSLEKKNRWETVDSVSLL 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,590,779
Number of Sequences: 27780
Number of extensions: 316345
Number of successful extensions: 923
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)