Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_P07
(1007 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.003
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.78
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 28 1.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 5.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.5 bits (83), Expect = 0.003
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = +2
Query: 758 PAPXXXXPXXXXXGPXXXXPPXPPXGXXXXPPPPPGPXXXXPXPTXPP 901
P P P PP P G PPPPPG P P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 31.9 bits (69), Expect = 0.15
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 758 PAPXXXXPXXXXXGPXXXXPPXPPXGXXXXPPPPPGP 868
PAP P G PP P PPPPP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +1
Query: 847 PPPXPXXXXXXTXPNXPXPEXPPFKXXXKNPPXXXXTXXRXAXPXPXP 990
PPP P T P P PP PP A P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 744 VPXPAPXRXXXXPXXXXXAPXXXXPPXPPXGXXXPPPXP 860
VP PAP P PP P PPP P
Sbjct: 741 VPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/47 (27%), Positives = 14/47 (29%)
Frame = +2
Query: 761 APXXXXPXXXXXGPXXXXPPXPPXGXXXXPPPPPGPXXXXPXPTXPP 901
+P P P P PP PPPP P PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.78
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +2
Query: 800 PXXXXPPXPPXGXXXXPPPPPGPXXXXPXPTXPP 901
P P PP PPPP P P+ PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 818 PXPPXGXXXXPPPPPGPXXXXPXP 889
P P G PPPPPG P P
Sbjct: 280 PMGPGGAPLVPPPPPGMVMASPSP 303
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 827 PXGXXXXPPPPPGPXXXXPXPTXPP 901
P G PPPPPG P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Frame = +2
Query: 800 PXXXXPPXPPXG--XXXXPPPPPGP 868
P PP PP G PPPPP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 4.2
Identities = 19/82 (23%), Positives = 19/82 (23%)
Frame = +2
Query: 692 PXGPXRHXXXPSXXX*XGXEXRPAPXXXXPXXXXXGPXXXXPPXPPXGXXXXPPPPPGPX 871
P P P G P P P P P G PPP P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 872 XXXPXPTXPPXXXXXLXPXXKT 937
P PP P T
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPVPT 1221
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 5.5
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 818 PXPPXGXXXXPPPPP 862
P PP G PPPPP
Sbjct: 352 PLPPQGRSAPPPPPP 366
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +2
Query: 758 PAPXXXXPXXXXXGPXXXXPPXPPXGXXXXPPPPPGPXXXXPXPTXPP 901
P P P P PP P G PP PP P P P
Sbjct: 418 PTPPSLPPSAPPSLPPSA-PPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464
Score = 26.6 bits (56), Expect = 5.5
Identities = 17/64 (26%), Positives = 18/64 (28%), Gaps = 1/64 (1%)
Frame = +3
Query: 714 PXXPXGTXKXVPXPAPXRXXXX-PXXXXXAPXXXXPPXPPXGXXXPPPXPXXXXAPHXPQ 890
P P +P AP P P P P G PP P AP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Query: 891 RPXP 902
P P
Sbjct: 481 APAP 484
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 9.7
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Frame = +3
Query: 744 VPXPAPXRXXXXPXXXXXAPXXXXPPXPPXG-XXXPPPXPXXXXA--PHXPQRPXP 902
+P P+P P P PP P PP P A P P+ P P
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,222
Number of Sequences: 5004
Number of extensions: 22616
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 523262732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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