Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P06
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual        35   0.014
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    31   0.17 
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    27   4.9  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   6.5  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   6.5  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    26   8.6  

>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +1

Query: 478 LDLYLERIYKLNVMCGRRPNHVLVNEYTPGQGIMPHLDGNLFYPTITTISVGSHIVLKFL 657
           L+ Y+   +K  +  G+    +++  Y PG GI+PH D  +F   +   S  S+  + F 
Sbjct: 97  LNDYIPSDFKQRLWKGQDAEAIIMQVYNPGDGIIPHKDLEMFGDGVAIFSFLSNTTMIFT 156

Query: 658 KP 663
            P
Sbjct: 157 HP 158


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 311 HITLVNSSQKPKNS*YCQTYMQH 379
           HIT+++ SQKP NS   + Y+QH
Sbjct: 662 HITMIHESQKPVNSRIWEQYLQH 684


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 394 TQLSNRRLQNWGGVPHNK 447
           +QLS   L  W GVPH K
Sbjct: 32  SQLSKHLLPQWSGVPHRK 49


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -3

Query: 570  LSWCIFIYQYMVWSSTTHNI*FVNSFEI*VQPSRYCFCY-HSLIVWDTSPI 421
            + +CIF Y    W + +HN+       I      Y   Y     VWDTS +
Sbjct: 885  VGFCIFEYNSSSWRNISHNLISAEVQSILWVNETYSSMYLAGKFVWDTSDV 935


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/61 (22%), Positives = 23/61 (37%)
 Frame = +1

Query: 301 EPTAYYISKFITEAEEQLILSNIYAAPKPKWTQLSNRRLQNWGGVPHNKGMIAETIPTWL 480
           + T+ Y+      A +  I+   Y+ P P+W   S     N          +   +PT L
Sbjct: 590 QSTSLYVQNSQPSASQLTIVDATYSQPPPRWESSSRDDKTNTSST--QPSQVDSLVPTQL 647

Query: 481 D 483
           D
Sbjct: 648 D 648


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 385 PKWTQLSNRRLQNWGGVPHNK-GMIAETIPTWLDLYLERIY-KLNV 516
           P W      +    GG+PH+K GM + ++      Y+E IY KLN+
Sbjct: 725 PWWKSFFTGKKPTMGGIPHDKYGMTSLSV----RCYVEGIYKKLNI 766


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,438,914
Number of Sequences: 5004
Number of extensions: 71662
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)