Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P06
         (917 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0028 - 14262607-14262783,14262886-14262932,14263014-142632...   132   3e-31
04_04_1056 - 30447791-30447850,30448020-30448085,30448299-304485...    48   1e-05
06_01_0275 + 2029542-2029689,2029777-2030295,2030657-2030754,203...    33   0.32 
11_06_0608 - 25442883-25443206,25443420-25443623,25443831-254438...    32   0.73 
03_06_0236 - 32545561-32546961                                         29   6.8  
03_06_0336 - 33220493-33220986,33221077-33221252,33221357-332214...    28   9.0  

>10_08_0028 -
           14262607-14262783,14262886-14262932,14263014-14263281,
           14263374-14263486,14264362-14264400,14264531-14264591,
           14264685-14264834
          Length = 284

 Score =  132 bits (320), Expect = 3e-31
 Identities = 57/123 (46%), Positives = 80/123 (65%)
 Frame = +1

Query: 286 YSL*AEPTAYYISKFITEAEEQLILSNIYAAPKPKWTQLSNRRLQNWGGVPHNKGMIAET 465
           Y++   PT  Y+  FI++AE+  +L +IY AP PKW  L NRRLQNWGGV H KG++ + 
Sbjct: 24  YAVGPIPTLLYVPGFISDAEQSQLLHHIYQAPAPKWKSLKNRRLQNWGGVVHEKGLLPQA 83

Query: 466 IPTWLDLYLERIYKLNVMCGRRPNHVLVNEYTPGQGIMPHLDGNLFYPTITTISVGSHIV 645
           +P+WL    +RI +   +     NHVL+NEY P QGIMPH DG  ++P +  IS+ S +V
Sbjct: 84  LPSWLTKITDRICQWTGLFPSAINHVLINEYHPNQGIMPHQDGPAYFPVVAIISLASPVV 143

Query: 646 LKF 654
           + F
Sbjct: 144 IDF 146


>04_04_1056 -
           30447791-30447850,30448020-30448085,30448299-30448583,
           30448744-30448869,30449068-30449154,30449273-30449695
          Length = 348

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
 Frame = +1

Query: 304 PTAYYISKFITEAEEQLILSNIYAAPKPKWTQLSNRRLQNWGGV-------PHNKGMIAE 462
           P  Y +  F+T AEEQ +L+ +   P   W  L+ RR+Q++G           +K  + E
Sbjct: 126 PGIYLVPDFVTAAEEQELLAAVDNRP---WKSLAKRRVQHYGFEFLYETRNVDSKQFLGE 182

Query: 463 TIPTWLDLYLERIYKL---NVMCGRRPNHVLVNEYTPGQGIMPHLD-GNLFYPTITTISV 630
            +P ++   +++I      N    +  + + VNEY  G G+ PH+D  + F   I ++S+
Sbjct: 183 -LPPFVSKIIDKIMSFPGANKCTSKLVDQLTVNEYPCGVGLSPHIDTHSAFEEMIFSLSL 241

Query: 631 GSHIVLKFLK 660
               +++F K
Sbjct: 242 AGPCIMEFRK 251


>06_01_0275 +
           2029542-2029689,2029777-2030295,2030657-2030754,
           2031718-2032028,2032560-2032631,2032729-2033398
          Length = 605

 Score = 33.1 bits (72), Expect = 0.32
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 457 AETIPTWLDLYLERIYKLNVMCGRR-PNHVLVNEYTPGQGIMPHLDGNLFYPTITTISVG 633
           ++ +P+   + ++R+ + +V+     P+  +VN Y PG  I PH+D + F     T+S  
Sbjct: 270 SDPMPSLFKIMIKRLVRWHVLPKTCIPDSCIVNIYDPGDCIPPHIDSHDFVRPFCTVSFL 329

Query: 634 SHIVLKF 654
           S   + F
Sbjct: 330 SECNILF 336


>11_06_0608 -
           25442883-25443206,25443420-25443623,25443831-25443859,
           25444335-25444557
          Length = 259

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
 Frame = +1

Query: 526 RRP--NHVLVNEYTPGQGIMPHLDGNLFYPTITTISVGSHIVLKFLK-----PTTDN-EK 681
           R+P  + ++ N Y PG+GI  H+D   F   I  +S+ S  V+ F +     P  +  E 
Sbjct: 136 RKPLFDQMIANRYEPGEGICAHVDLMRFDDGIAIVSLESPCVMHFSRAEQEVPICETLES 195

Query: 682 VEMQPL-FSFLLEPRSLLIL 738
           V  +P      L P SL+++
Sbjct: 196 VHAEPTKIPVYLNPGSLVLM 215


>03_06_0236 - 32545561-32546961
          Length = 466

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 625 SVGSHIVLKFLKPTTDNEKVEMQPLFS-FLLEPRSLLILQDKLL 753
           +VG H V  F  P  +  + ++ P F  FLLEPR+L  LQ  LL
Sbjct: 85  AVGKHNVTIFA-PRNEALERDLDPEFKRFLLEPRNLKSLQSLLL 127


>03_06_0336 -
           33220493-33220986,33221077-33221252,33221357-33221492,
           33221731-33221894,33222902-33222969
          Length = 345

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 740 CKISKLLGSNKKENSGCISTFS 675
           C  SKLLG+NK +N   ++TFS
Sbjct: 25  CSQSKLLGTNKGQNRCSLATFS 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,224,094
Number of Sequences: 37544
Number of extensions: 398884
Number of successful extensions: 772
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)