Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P06
         (917 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC105801-1|AAI05802.1|  258|Homo sapiens ALKBH6 protein protein.      178   2e-44
AB273714-1|BAF63844.1|  238|Homo sapiens alkylation repair homol...   178   2e-44
BC062339-1|AAH62339.1|  458|Homo sapiens alkB, alkylation repair...    32   2.5  
AK000315-1|BAA91078.1|  378|Homo sapiens protein ( Homo sapiens ...    32   2.5  

>BC105801-1|AAI05802.1|  258|Homo sapiens ALKBH6 protein protein.
          Length = 258

 Score =  178 bits (434), Expect = 2e-44
 Identities = 79/155 (50%), Positives = 109/155 (70%), Gaps = 7/155 (4%)
 Frame = +1

Query: 298 AEPTAYYISKFITEAEEQLILSNIYAAPKPKWTQLSNRRLQNWGGVPHNKGMIAETIPTW 477
           A P  YY+  FI++ EE+ +L  ++ APKPKWTQLS R+LQNWGG+PH +GM+ E +P W
Sbjct: 39  APPVIYYVPDFISKEEEEYLLRQVFNAPKPKWTQLSGRKLQNWGGLPHPRGMVPERLPPW 98

Query: 478 LDLYLERIYKLNVMCGRRPNHVLVNEYTPGQGIMPHLDGNLFYPTITTISVGSHIVLKFL 657
           L  Y++++  L++  G   NHVLVN+Y PG+GIMPH DG L+YPT++TIS+GSH VL F 
Sbjct: 99  LQRYVDKVSNLSLFGGLPANHVLVNQYLPGEGIMPHEDGPLYYPTVSTISLGSHTVLDFY 158

Query: 658 KP-------TTDNEKVEMQPLFSFLLEPRSLLILQ 741
           +P        T+  +   +P  S LLEPRSLL+L+
Sbjct: 159 EPRRPEDDDPTEQPRPPPRPTTSLLLEPRSLLVLR 193


>AB273714-1|BAF63844.1|  238|Homo sapiens alkylation repair homolog
           6 isoform 3 protein.
          Length = 238

 Score =  178 bits (434), Expect = 2e-44
 Identities = 79/155 (50%), Positives = 109/155 (70%), Gaps = 7/155 (4%)
 Frame = +1

Query: 298 AEPTAYYISKFITEAEEQLILSNIYAAPKPKWTQLSNRRLQNWGGVPHNKGMIAETIPTW 477
           A P  YY+  FI++ EE+ +L  ++ APKPKWTQLS R+LQNWGG+PH +GM+ E +P W
Sbjct: 19  APPVIYYVPDFISKEEEEYLLRQVFNAPKPKWTQLSGRKLQNWGGLPHPRGMVPERLPPW 78

Query: 478 LDLYLERIYKLNVMCGRRPNHVLVNEYTPGQGIMPHLDGNLFYPTITTISVGSHIVLKFL 657
           L  Y++++  L++  G   NHVLVN+Y PG+GIMPH DG L+YPT++TIS+GSH VL F 
Sbjct: 79  LQRYVDKVSNLSLFGGLPANHVLVNQYLPGEGIMPHEDGPLYYPTVSTISLGSHTVLDFY 138

Query: 658 KP-------TTDNEKVEMQPLFSFLLEPRSLLILQ 741
           +P        T+  +   +P  S LLEPRSLL+L+
Sbjct: 139 EPRRPEDDDPTEQPRPPPRPTTSLLLEPRSLLVLR 173


>BC062339-1|AAH62339.1|  458|Homo sapiens alkB, alkylation repair
           homolog 5 (E. coli) protein.
          Length = 458

 Score = 32.3 bits (70), Expect = 2.5
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +1

Query: 460 ETIPTWL-DLYLERIYKLNVMCGRRPNHVLVNEYTPGQGIMPHLDG-NLFYPTITTISVG 633
           + IP W+  L ++++ +  V+     N  ++N+Y PG  I+ H+D  ++F   I ++S  
Sbjct: 162 DEIPEWVHQLVIQKLVEHRVIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFF 221

Query: 634 SHIVLKF 654
           S   L F
Sbjct: 222 SDSALCF 228


>AK000315-1|BAA91078.1|  378|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20308 fis, clone HEP07264. ).
          Length = 378

 Score = 32.3 bits (70), Expect = 2.5
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +1

Query: 460 ETIPTWL-DLYLERIYKLNVMCGRRPNHVLVNEYTPGQGIMPHLDG-NLFYPTITTISVG 633
           + IP W+  L ++++ +  V+     N  ++N+Y PG  I+ H+D  ++F   I ++S  
Sbjct: 146 DEIPEWVHQLVIQKLVEHRVIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFF 205

Query: 634 SHIVLKF 654
           S   L F
Sbjct: 206 SDSALCF 212


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,868,916
Number of Sequences: 237096
Number of extensions: 2447000
Number of successful extensions: 4482
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4479
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11936890730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)