Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P06
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           24   2.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   9.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   9.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   9.0  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 394 TQLSNRRLQNWGGVPHNKGMIAETIPTWLDLYLERIYK 507
           T+ + RRL   GGV    G+I E     L ++LE + +
Sbjct: 31  TKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIR 68


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 497 LSRYRSNQVGIVSAIIPLLCGTPP 426
           L++YR N V +    + LL   PP
Sbjct: 508 LNKYRGNGVSLKGETVGLLNALPP 531


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 37  LKILVLVVYFTIHYYT*SFISSKKRFLTHLN*RNHGEHVH 156
           LK+LV +   T  + T   ++  KRF+  L  R     VH
Sbjct: 71  LKVLVPLGPETSRHTTLGLLTKAKRFIKSLEERERKHAVH 110


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 302 SAYREYMSYIFTELDYKI 249
           +AY E  S +FT++D +I
Sbjct: 223 AAYEETFSLVFTKIDNEI 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,124
Number of Sequences: 438
Number of extensions: 5010
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)