Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_P04
(957 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.005
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.011
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.32
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.73
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.73
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.7
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 27 5.2
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 27 5.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.8
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 26 9.0
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 9.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.7 bits (81), Expect = 0.005
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = +1
Query: 508 ETPPPPGXGXXFXGPPPGXPPPXPXAPAXGGXEKGXHXPPRGVIGFPPQPXGXP 669
++PPPP P P P P AP GG PP GV G P P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP--PPPPPPGVAGAGPPPPPPP 781
Score = 35.9 bits (79), Expect = 0.008
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +1
Query: 514 PPPPGXGXXFXGPPPGXPPPXPXAPAXGG 600
PPPP G GPPP PPP P A + GG
Sbjct: 763 PPPPPPGVAGAGPPP--PPPPPPAVSAGG 789
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.5 bits (78), Expect = 0.011
Identities = 37/156 (23%), Positives = 43/156 (27%), Gaps = 11/156 (7%)
Frame = +1
Query: 505 KETPPPPGXGXXFXGPPP--------GXPPPXPXAPAXGGXEKGXHXPPRGVIGFPPQP- 657
K PPPP G PP PPP P P PP+G PP P
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP--PPRSNAAGSIPLPPQGRSAPPPPPP 366
Query: 658 -XGXPXXKXFXXKGAXKXAXNPXKSPP-FXGXFPXKAPPPRTAXQKNGPPXXXGGQPPAG 831
+ + + NP PP G PP A + + PP P
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPS 426
Query: 832 XXXXXXXXXXXXXXXXXXXXPPXPXSXKPGPLSPXG 939
PP P S P P G
Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG 462
Score = 31.1 bits (67), Expect = 0.24
Identities = 32/128 (25%), Positives = 39/128 (30%), Gaps = 7/128 (5%)
Frame = +1
Query: 466 PXPGGGGGXXSXXKETPPPPGXGXXFXGPPP----GXPPPXPXAPAXGGXEKGXHXPPRG 633
P G G S PPP PP PPP P + G + R
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384
Query: 634 VIGFPPQPXGXPXXKXFXXK---GAXKXAXNPXKSPPFXGXFPXKAPPPRTAXQKNGPPX 804
V P P P A + + P +PP P APP + + PP
Sbjct: 385 VSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP---SLPPSAPP---SLPPSAPPS 438
Query: 805 XXGGQPPA 828
G P A
Sbjct: 439 LPMGAPAA 446
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Frame = +3
Query: 843 PGGSPPGXPPXXP---PRXPXXPXFXETXPPFPLG 938
P PP PP P P P P PP P G
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG 462
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/31 (38%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Frame = +3
Query: 843 PGGSPPGXPPXXPP-RXPXXPXFXETXPPFP 932
P PP PP PP P P PP P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = +3
Query: 843 PGGSPPGXPPXXPPRXPXXPXFXETXPP 926
P +PP PP PP P PP
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.32
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 514 PPPPGXGXXFXGPPPGXPPPXPXAPA 591
PPPP GPP PPP P + A
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSA 1740
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/50 (28%), Positives = 16/50 (32%)
Frame = +1
Query: 508 ETPPPPGXGXXFXGPPPGXPPPXPXAPAXGGXEKGXHXPPRGVIGFPPQP 657
++ PP PPP PP P AP PP P P
Sbjct: 1695 QSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.73
Identities = 28/80 (35%), Positives = 29/80 (36%)
Frame = -2
Query: 752 GXXPXKGGLFXGFXALXXAPLXXKXFXXGXPXGCGGNPITPLGGXXNPFSXPPXAGAXGX 573
G P GG F GF + G G GG P GG F P G G
Sbjct: 199 GPPPGPGG-FGGFGGFGG-----EGHHHGGHGGFGGGPGGFEGGPGG-FGGGP--GGFGG 249
Query: 572 GGGXPGGGPXNXXPFPGGGG 513
G G GGGP PGG G
Sbjct: 250 GLGGFGGGPGGFGGGPGGHG 269
Score = 26.6 bits (56), Expect = 5.2
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = -2
Query: 668 GXPXGCGGNPITPLGGXXNPFSXPPXAGAXGXGGGXPGGGPXNXXPFPGGGG 513
G G GG P P G F G G G GGGP PGG G
Sbjct: 192 GFGGGSGGPPPGP--GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG 241
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = -2
Query: 668 GXPXGCGGNPITPLGGXXNPFSXPPXAGAXGXGG-GXPG 555
G P G GG P GG F P G GG G PG
Sbjct: 235 GGPGGFGGGP-GGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.73
Identities = 27/112 (24%), Positives = 29/112 (25%)
Frame = +1
Query: 466 PXPGGGGGXXSXXKETPPPPGXGXXFXGPPPGXPPPXPXAPAXGGXEKGXHXPPRGVIGF 645
P P G PP P G PP P P AP G P+ G
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPS----GAPP-VPKPSVAAPPVPAPSSGIPPVPKPAAGV 1188
Query: 646 PPQPXGXPXXKXFXXKGAXKXAXNPXKSPPFXGXFPXKAPPPRTAXQKNGPP 801
PP P P +PP P PP PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV--PTPSAGLPPVPVPTAKAPP 1238
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 553 PPGXPPPXPXAPAXGGXEKGXHXPPRGVI 639
PPG PPP P P + PP G +
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYV 33
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 855 PPGXPPXXPPRXPXXPXFXETXPPFP 932
PPG PP PP P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 514 PPPPGXGXXFXGPPPGXPPP 573
PPPP G PP PPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -2
Query: 548 PXNXXPFPGGGGVSXXXXKXPPPPPG 471
P N P P G PPPPPG
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = -2
Query: 587 GAXGXGGGXPGGGPXNXXPFPGGG 516
G G GG PGGGP FPGGG
Sbjct: 75 GLNGQPGG-PGGGPGEG--FPGGG 95
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 472 PGGGGGXXSXXKETPPPPGXGXXFXGPPPGXPP 570
P G G T PPP G PPPG P
Sbjct: 114 PVGLAGPVRGVGYTAPPPPAGFGRGAPPPGFRP 146
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/38 (31%), Positives = 14/38 (36%)
Frame = +3
Query: 819 TPRGHXXXPGGSPPGXPPXXPPRXPXXPXFXETXPPFP 932
TP+ P +PP P PP P PP P
Sbjct: 132 TPQSELRPPTSAPP-RPSIPPPSPASAPPIPSKAPPIP 168
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Frame = -2
Query: 569 GGXPGGGPXNXXPFPGGGGVSXXXXKXP---PPPPG 471
GG GGG N GGG+ P P PPG
Sbjct: 838 GGNDGGGTENHRDSTVGGGILKNPKAYPYREPTPPG 873
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +1
Query: 466 PXPGGGGGXXSXXKETPP-PPGXGXXFXGPPPGXPPPXPXAPA 591
P PG G + P PPG PPG P P P PA
Sbjct: 507 PIPGAPGMPNLNMSQPPMVPPGMAL-----PPGMPAPFPGYPA 544
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.152 0.550
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,434
Number of Sequences: 5004
Number of extensions: 35313
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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