Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P04
         (957 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 813 GXTPRGHXXXPGGSPPGXPPXXPP 884
           G  P      P G PPG PP   P
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 11/38 (28%), Positives = 14/38 (36%)
 Frame = +1

Query: 466 PXPGGGGGXXSXXKETPPPPGXGXXFXGPPPGXPPPXP 579
           P P       +  + +PP P  G    GPP   P   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +1

Query: 718 PXKSPPFXGXFPXKAPPPRTAXQKNGPPXXXGGQPPAG 831
           P    P     P ++P    A Q+  PP    G PP G
Sbjct: 16  PSSGAPGPQPSPHQSPQ---APQRGSPPNPSQGPPPGG 50



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = +2

Query: 857 PGXPPXGXPPXPXXAXXXGNXAPFPPXE 940
           P  P  G PP P      G     PP +
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQ 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.152    0.550 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,439
Number of Sequences: 438
Number of extensions: 6495
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)