Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_P03
(940 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.011
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.025
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.13
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.54
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.72
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 5.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -3
Query: 470 PPXXXXAGGGPPPXXXPXGGSXGGXPPXPXHXXGXXXGGPPPPP 339
PP P P P G PP P G GPPPPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 31.5 bits (68), Expect = 0.18
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 446 GGPPPXXXPXGGSXGGXPPXPXHXXGXXXGG 354
GGPPP P G + G PP P GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 31.1 bits (67), Expect = 0.23
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +2
Query: 443 PPPPQXXXGGXPPXXXXXRGPPXPXEPTXXXGPSXXPPPXXGXGXAPKXXXXPPP 607
PPPP P PP P GP PPP G P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPI----MGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 30.3 bits (65), Expect = 0.41
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = -3
Query: 470 PPXXXXAGGGPPPXXXPXGGSXGGXPPXPXHXXGXXXGGPPPPP 339
PP GG PPP P G G PP P PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP--GVAGAGPPPP----------PPPPP 783
Score = 29.9 bits (64), Expect = 0.54
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 346 GGGPPXKXPXXWXGXGGXPPXDPPXGXXXGG 438
GG PP P G G PP PP GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 29.9 bits (64), Expect = 0.54
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 391 GGXPPXDPPXGXXXGGGPPP 450
GG PP PP G G PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778
Score = 29.1 bits (62), Expect = 0.95
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 356 PXXXNPXCGXXGGXXPPXIPRGXXXXGGAPPPP 454
P P GG PP P G G PPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 349 GGPPXKXPXXWXGXGGXPPXDPPXGXXXGGG 441
GGPP P G PP PP GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 28.3 bits (60), Expect = 1.7
Identities = 19/59 (32%), Positives = 20/59 (33%)
Frame = -3
Query: 575 PXPLXGVVXXXWAPXXXXVPXGXGAPAXNXXWGXXPPXXXXAGGGPPPXXXPXGGSXGG 399
P P V+ AP VP AP PP G PPP P S GG
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPP--APIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 757 PPXXSPQKXGAVPXXXPPPPP 819
PP P GA P PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +1
Query: 703 PPXKPXXXKXTXSAXQXGPPXXSPQKXGAVPXXXPPPPPXSP 828
P P A G P P G PPPPP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.3 bits (75), Expect = 0.025
Identities = 19/62 (30%), Positives = 20/62 (32%)
Frame = +2
Query: 443 PPPPQXXXGGXPPXXXXXRGPPXPXEPTXXXGPSXXPPPXXGXGXAPKXXXXPPPXXKXR 622
PPPP+ G P R P P P PPP A PPP R
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP-LSSSRAVSNPPAPPPAIPGR 398
Query: 623 XA 628
A
Sbjct: 399 SA 400
Score = 28.3 bits (60), Expect = 1.7
Identities = 33/158 (20%), Positives = 37/158 (23%)
Frame = +1
Query: 355 PPXKXPXXWXGXGGXPPXDPPXGXXXGGGPPPAXXXXGGXXPXXXXXAGAPXPXGTXXXX 534
PP P G P + PPP G P AP P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 535 GAQXXXTTPXRGXGXXXKXPXPPPXTKXKGXXAHXXPTXXPXXGEXXXPGXXHPPXPPXK 714
P P PPP + A P G P PP
Sbjct: 371 ST-GRQPPPLSSSRAVSNPPAPPPAIPGRSAPA------LPPLGNASRTSTPPVPTPPSL 423
Query: 715 PXXXKXTXSAXQXGPPXXSPQKXGAVPXXXPPPPPXSP 828
P PP P ++P P PP P
Sbjct: 424 PPS----------APPSLPPSAPPSLPMGAPAAPPLPP 451
Score = 26.6 bits (56), Expect = 5.0
Identities = 20/70 (28%), Positives = 21/70 (30%), Gaps = 10/70 (14%)
Frame = +2
Query: 443 PPPPQXXXGGXPPXXXXXRG----PPXPXEPTXXXGPSXXP------PPXXGXGXAPKXX 592
PPPP G PP PP P + G P PP AP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 593 XXPPPXXKXR 622
PPP R
Sbjct: 374 RQPPPLSSSR 383
Score = 26.2 bits (55), Expect = 6.7
Identities = 39/181 (21%), Positives = 44/181 (24%), Gaps = 2/181 (1%)
Frame = +1
Query: 283 PPXPXKAFXXXTXXXXSXXGGGGGPPXKXPXXWXGXGGXPPXDPPXGXXXGGGPPPAXXX 462
PP P + PP P G P PP G PPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPL--PPQGRSAPPPPPPRSAP 370
Query: 463 XGGXXPXXXXXAGAPX--PXGTXXXXGAQXXXTTPXRGXGXXXKXPXPPPXTKXKGXXAH 636
G P + A P G P P P P +
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPS 430
Query: 637 XXPTXXPXXGEXXXPGXXHPPXPPXKPXXXKXTXSAXQXGPPXXSPQKXGAVPXXXPPPP 816
P+ P P PP PP P G P P +P P PP
Sbjct: 431 LPPSAPPSL-PMGAPAA--PPLPPSAPIAPPLPA-----GMPAAPP-----LPPAAPAPP 477
Query: 817 P 819
P
Sbjct: 478 P 478
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/63 (28%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Frame = +1
Query: 643 PTXXPXXGEXXXPGXXH-PPXPPXKPXXXKXTXSAXQXGPPXXSPQKXGAVPXXXPPPPP 819
PT P P PP P P Q P SP ++P PP PP
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Query: 820 XSP 828
P
Sbjct: 200 KVP 202
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.54
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +2
Query: 449 PPQXXXGGXPPXXXXXRGPPXPXEPTXXXGPSXXPPPXXGXGXAP 583
PPQ PP PP P P GP PPP AP
Sbjct: 1699 PPQMSAPTPPPPPMSV--PPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = +2
Query: 476 PPXXXXXRGPPXPXEPTXXXGPSXXPPPXXGXGXAPKXXXXPPP 607
PP PP PT P PPP PPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.72
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 757 PPXXSPQKXGAVPXXXPPPPPXSP 828
PP +P++ +P PPPPP P
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLP 247
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = -1
Query: 472 PPPXXLXRGGGPPPXXXPXGDRXGAXPPXXXTXXVXXXGXPPP 344
PPP L + G PP P A PP T G P P
Sbjct: 1885 PPPMALPKAG--PPSAAPTSALPPAGPPAGATAISGNPGMPAP 1925
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Frame = +1
Query: 691 HPPXPPXKPXXXKXTXSAXQXGPPXX----SPQKXGAVPXXXPPPPPXSP 828
HP PP P K + + G +P PPPPP P
Sbjct: 904 HPTPPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPPP 953
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.7
Identities = 18/68 (26%), Positives = 21/68 (30%)
Frame = +2
Query: 404 PXIPRGXXXXGGAPPPPQXXXGGXPPXXXXXRGPPXPXEPTXXXGPSXXPPPXXGXGXAP 583
P +P+ APPP P PP P P+ G P P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP-APS---GIPPVPKPSVAAPPVP 1105
Query: 584 KXXXXPPP 607
K PP
Sbjct: 1106 KPSVAVPP 1113
Score = 25.8 bits (54), Expect = 8.8
Identities = 17/56 (30%), Positives = 20/56 (35%)
Frame = +2
Query: 437 GAPPPPQXXXGGXPPXXXXXRGPPXPXEPTXXXGPSXXPPPXXGXGXAPKXXXXPP 604
G PP P+ G PP PP P +P+ P PPP PP
Sbjct: 1177 GIPPVPKPA-AGVPPVPPPSEAPPVP-KPSVGVPP--VPPPSTAPPVPTPSAGLPP 1228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,872
Number of Sequences: 5004
Number of extensions: 33207
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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