Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P02
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   145   9e-36
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   142   5e-35
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    26   8.4  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  145 bits (351), Expect = 9e-36
 Identities = 75/135 (55%), Positives = 96/135 (71%), Gaps = 5/135 (3%)
 Frame = +3

Query: 87  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 266
           ML+PK+NR AI++ LF++GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 267 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 446
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   RS+   +
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADA 116

Query: 447 AYRRTP-----AAPG 476
            YRR       AAPG
Sbjct: 117 GYRRAEKKDDGAAPG 131


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  142 bits (345), Expect = 5e-35
 Identities = 71/124 (57%), Positives = 92/124 (74%)
 Frame = +3

Query: 87  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 266
           ML+PK+NR AI++ LF +GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 267 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 446
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R++ D +
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-A 115

Query: 447 AYRR 458
            YRR
Sbjct: 116 GYRR 119


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 445 DLSSAERAGASGRPTGPRRT 386
           DLSSAER  A GRP   + T
Sbjct: 221 DLSSAERVVAGGRPLKDKET 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,883
Number of Sequences: 5004
Number of extensions: 45639
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)