Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P02
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   134   8e-32
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    29   6.0  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  134 bits (324), Expect = 8e-32
 Identities = 71/133 (53%), Positives = 84/133 (63%), Gaps = 3/133 (2%)
 Frame = +3

Query: 87  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 266
           M +PK +   IYEYLF EGV VAKKD++A  H  +E + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 267 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 446
           AWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R   V       P A      DR 
Sbjct: 61  AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDRE 119

Query: 447 AYRR---TPAAPG 476
           AYR    T A PG
Sbjct: 120 AYRTEKVTEAGPG 132


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +3

Query: 396 GPVGRPDAPARSAEDRSAYRRTPAAP 473
           G V RP APAR A   +  R  PAAP
Sbjct: 33  GRVSRPAAPARGAPPAARGRPAPAAP 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,966,938
Number of Sequences: 27780
Number of extensions: 268888
Number of successful extensions: 821
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)