Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_P01
         (933 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    31   0.017
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    31   0.017
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    25   0.84 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   3.4  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   3.4  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   5.9  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 30.7 bits (66), Expect = 0.017
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 521 LVQKIGSLLPRLIKLSKH-LXALVNDPEPEHPLRAELAEEFLKDRXKFTKNAXE 679
           ++    S+ P  + +  H L  +  D EP HP+R      F  +R  F  NA +
Sbjct: 348 MINSFASVCPAQLTIQGHDLTLIATDGEPVHPVRVNTIISFSGERYDFVINADQ 401


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 30.7 bits (66), Expect = 0.017
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 521 LVQKIGSLLPRLIKLSKH-LXALVNDPEPEHPLRAELAEEFLKDRXKFTKNAXE 679
           ++    S+ P  + +  H L  +  D EP HP+R      F  +R  F  NA +
Sbjct: 348 MINSFASVCPAQLTIQGHDLTLIATDGEPVHPVRVNTIISFSGERYDFVINADQ 401


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +2

Query: 140 FLLCCVIMVFDWNDN 184
           F++CC++++F + DN
Sbjct: 5   FVVCCLLLMFSYTDN 19


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = +1

Query: 349 LTWQGLIVPDNPPYNKGAFRIEI-NFPAEYPFKPPKISFKTKIYHP 483
           + W    V  +P +    F     + P  YP  PP  +     YHP
Sbjct: 133 IAWPYAAVYTDPAFAASIFHAAATSLPLHYPPPPPVYTHHYARYHP 178


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 248 QNLLKCPKIFQRYSFLKFKSINCHSNQTP*LRSTIEIKKLN*HGK 114
           Q LL+ PK  ++       +++C+  +T  LRS+ E +    H K
Sbjct: 212 QPLLRLPKFKKKPLLCVVSTLSCYLERTELLRSSGETRLFLTHRK 256


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 498 LFINVRVVNLCFETNFRGFEW 436
           +F++ R   LC E N   F W
Sbjct: 151 IFLSFRCTKLCKEANKTAFLW 171


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,329
Number of Sequences: 336
Number of extensions: 3570
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26168549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)