Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_O24
         (983 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AF025451-4|AAL16306.1|  567|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched rela...    29   6.7  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 238 YKDTRRFPLEAPSCALLFRPXRLPDTCPPFSLREAWRF 351
           Y+  R+F +E    ALL +   +P+TC   +  E W F
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIF 108


>AF025451-4|AAL16306.1|  567|Caenorhabditis elegans Hypothetical
           protein C24H12.4b protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 246 IFIVLSGFATSDLSVDFCDARSGGRSLWKNASKRGLFTVPGLLLAFCS 103
           +F+ LS       +++ CD      S+W       + T PG LL  CS
Sbjct: 115 LFVKLSQALPFLQAINLCDINEEENSVWLEDRSHVVVTTPGKLLRMCS 162


>AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical
           protein C24H12.4a protein.
          Length = 634

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 246 IFIVLSGFATSDLSVDFCDARSGGRSLWKNASKRGLFTVPGLLLAFCS 103
           +F+ LS       +++ CD      S+W       + T PG LL  CS
Sbjct: 182 LFVKLSQALPFLQAINLCDINEEENSVWLEDRSHVVVTTPGKLLRMCS 229


>AF067945-12|AAC17680.1|  840|Caenorhabditis elegans Patched related
           family protein 15 protein.
          Length = 840

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -1

Query: 215 LT*ASIFVMLVQGGGAYGKTPANAAFLRFLA----FCWPFAHMFFPAL 84
           +T  S+  +L  G G Y  TPA A F +F+A    F W +   FF A+
Sbjct: 369 ITVTSLTSVLSFGIGTYSTTPAIAIFCKFIALAIMFDWFYQLTFFAAV 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,801,965
Number of Sequences: 27780
Number of extensions: 368718
Number of successful extensions: 833
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2563248310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)