Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_O23
(962 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.079
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 31 0.18
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.18
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.32
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.56
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.079
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Frame = +2
Query: 527 PPPPPXXXTGPXPXKXPXPXGGPTPXXXGXSGXSP----AKXGXPPXXXP 664
PPPPP P P P P P P G P A G PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 30.3 bits (65), Expect = 0.42
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Frame = +1
Query: 700 QKXXXFPAPPPXRPPXXXAPPRRXPSRGXXPPXAXXLXGXPXXXPXP------PXPRRPX 861
Q+ +PPP PP P P+ PP A + G P P P P P P
Sbjct: 724 QQKLLLKSPPP--PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Query: 862 NPXXXWGG 885
P GG
Sbjct: 782 PPAVSAGG 789
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Frame = +2
Query: 527 PPPP----PXXXTGPXPXKXPXPXGG---PTPXXXGXSGXSPAKXGXPP 652
PPPP P P P P P G P P G +G P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 9.1
Identities = 20/58 (34%), Positives = 20/58 (34%)
Frame = +1
Query: 670 PXXPPXXXXPQKXXXFPAPPPXRPPXXXAPPRRXPSRGXXPPXAXXLXGXPXXXPXPP 843
P PP P PAP P PP AP P PP G P P PP
Sbjct: 733 PPPPPAVIVPTPA---PAPIPVPPP---APIMGGPPPPPPPPGVAGA-GPPPPPPPPP 783
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 31.5 bits (68), Expect = 0.18
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Frame = +1
Query: 670 PXXPPXXXXPQKXXXFPAPPPXRPPXXXAPPRRXPSRGXXPPXAXXLXGXPXXXPXPP-X 846
P PP P++ PAPPP PP P S+ P G P PP
Sbjct: 221 PEIPPTYT-PKQADPLPAPPPP-PPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPAT 278
Query: 847 PRRPXNP 867
P +P P
Sbjct: 279 PSQPPRP 285
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.18
Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Frame = +1
Query: 679 PPXXXXPQKXXXFPAPPPXRPPXXXAPPRRXPSRGXXPP---XAXXLXGXPXXXPXPPXP 849
PP P PP R PPR PS G PP + + P P P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398
Query: 850 RRPXNP 867
P P
Sbjct: 399 SAPALP 404
Score = 30.7 bits (66), Expect = 0.32
Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Frame = +1
Query: 649 PQXGPXXPXXPPXXXXPQKXXXFPAPPPXRPPXXXAP--PRRXPSRGXXPPXAXXLXGXP 822
P P P P P PA PP P AP P P+ PP A P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Query: 823 XXXPXPP 843
P P
Sbjct: 481 APAPAAP 487
Score = 29.5 bits (63), Expect = 0.74
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +1
Query: 718 PAPPPXRPPXXXAPPRRXPSRGXXPPXAXXLXGXPXXXPXPPXP 849
P+ PP P A P PS PP + P P P P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476
Score = 28.3 bits (60), Expect = 1.7
Identities = 21/75 (28%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Frame = +1
Query: 649 PQXGPXXPXXPPXXXXPQKXXXFPAPPPXRP--PXXXAPPRRXPSRGXXPPXAXXLXGXP 822
P+ P PP + PAPPP P PP SR PP P
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP 425
Query: 823 XXXPXPPXPRRPXNP 867
P P P P
Sbjct: 426 SAPPSLPPSAPPSLP 440
Score = 27.9 bits (59), Expect = 2.3
Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Frame = +1
Query: 661 PXXPXXPPXXXXPQKXXXF--PAPPPXRPPXXX--APPRRXPSRGXXPPXAXXLXGXPXX 828
P P P P++ PAPPP PP + P P R P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSK 289
Query: 829 XPXPPXPRR 855
P PP R
Sbjct: 290 PPLPPPSSR 298
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.32
Identities = 19/67 (28%), Positives = 20/67 (29%)
Frame = +1
Query: 649 PQXGPXXPXXPPXXXXPQKXXXFPAPPPXRPPXXXAPPRRXPSRGXXPPXAXXLXGXPXX 828
P+ P PP P PP PP APP PS G P P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPV-PPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Query: 829 XPXPPXP 849
P P
Sbjct: 1241 APSSEAP 1247
Score = 26.6 bits (56), Expect = 5.2
Identities = 28/119 (23%), Positives = 31/119 (26%), Gaps = 7/119 (5%)
Frame = +2
Query: 533 PPPXXXTGPXPXKXPXPXGGPTPXXXGXSGXSPAKXGXPPXXXP--XXPXXPXXXXXP-- 700
PP +G P P P P PA G PP P P P P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 701 KKXXXSRPP---PRXXPPXXXXXXXXXXXXXXXXXXXLXXRGXPXXPRXPPXHGAPKTP 868
K + PP P PP + P PP AP P
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.56
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +1
Query: 679 PPXXXXPQKXXXFPAPPPXRPPXXXAPPRRXPSRGXXPPXAXXLXGXPXXXPXPPXPRRP 858
PP P PP PP PP PS PP P P P P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPP---PSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/66 (27%), Positives = 21/66 (31%)
Frame = +1
Query: 661 PXXPXXPPXXXXPQKXXXFPAPPPXRPPXXXAPPRRXPSRGXXPPXAXXLXGXPXXXPXP 840
P P P P P P PP A P + P P A + P P P
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSA--VPPMPPKVPPP 204
Query: 841 PXPRRP 858
P + P
Sbjct: 205 PLSQAP 210
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 3.0
Identities = 19/60 (31%), Positives = 19/60 (31%)
Frame = +1
Query: 670 PXXPPXXXXPQKXXXFPAPPPXRPPXXXAPPRRXPSRGXXPPXAXXLXGXPXXXPXPPXP 849
P P PQ P PPP PP PP P PP A P P P
Sbjct: 1691 PVRPQSAAPPQMSA--PTPPP--PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +2
Query: 530 PPPPXXXTGPXPXKXPXPXGGPT 598
PPPP P P P P G P+
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPS 1729
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,831,870
Number of Sequences: 5004
Number of extensions: 21658
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -